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CsGy5G010768 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G010768
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationGy14Chr5:11371224..11371921
RNA-Seq ExpressionCsGy5G010768
SyntenyCsGy5G010768
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031735.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.57e-5874.19Show/hide
Query:  LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQH
        LA+LK HLQ AQEQMKKF DVHR  V+FDIGDWVYLK+QPYRQQSV K+ C+KL  +YF PYM+LGRVGEVAY+L LP+ AKIH VFHVSQLK+AV D+H
Subjt:  LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQH

Query:  QIQPNIAMLNDQMELVLEPENVTQ
        +IQP+I+ LNDQMELVL P+ VTQ
Subjt:  QIQPNIAMLNDQMELVLEPENVTQ

KAA0051271.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.09e-5775.2Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML  LK HLQHAQE+MKKF D+HR +V+FDIGD VYLK+QPYRQQSVTKK CEKL  RYF PY +LGRVGEVAY+L L KTAKIH VFHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        H + P++ M+NDQMELVLEPE VTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

KAA0052161.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.70e-6280.8Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML  LK HLQHAQEQMKKFADVHR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF PY +LGRVGEV Y+LGLP+TAKIH +FHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        HQ+ PNIAM+NDQMELVLEPENVTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

KAA0060331.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.10e-5977.6Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        MLA LK HLQHAQE+MKKFA+VHR +V+FDIGD V+LK+Q YRQQSV KK CEKLS RYF PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        HQ+ P+IAM+NDQMELV+EPENVTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

TYK28461.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.60e-5872.8Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML +LK HLQHAQE+M+KFA++HR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKA+ D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        H + P++ ++NDQMELVLEPENV Q
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

TrEMBL top hitse value%identityAlignment
A0A5A7SRH1 Ty3-gypsy retrotransposon protein3.67e-5874.19Show/hide
Query:  LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQH
        LA+LK HLQ AQEQMKKF DVHR  V+FDIGDWVYLK+QPYRQQSV K+ C+KL  +YF PYM+LGRVGEVAY+L LP+ AKIH VFHVSQLK+AV D+H
Subjt:  LAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQH

Query:  QIQPNIAMLNDQMELVLEPENVTQ
        +IQP+I+ LNDQMELVL P+ VTQ
Subjt:  QIQPNIAMLNDQMELVLEPENVTQ

A0A5A7UCK0 Ty3-gypsy retrotransposon protein3.92e-5775.2Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML  LK HLQHAQE+MKKF D+HR +V+FDIGD VYLK+QPYRQQSVTKK CEKL  RYF PY +LGRVGEVAY+L L KTAKIH VFHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        H + P++ M+NDQMELVLEPE VTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

A0A5D3C3X8 Retrotransposable element Tf21.79e-6280.8Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML  LK HLQHAQEQMKKFADVHR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF PY +LGRVGEV Y+LGLP+TAKIH +FHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        HQ+ PNIAM+NDQMELVLEPENVTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

A0A5D3DFB4 Transposon Ty3-G Gag-Pol polyprotein5.30e-6077.6Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        MLA LK HLQHAQE+MKKFA+VHR +V+FDIGD V+LK+Q YRQQSV KK CEKLS RYF PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKAV D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        HQ+ P+IAM+NDQMELV+EPENVTQ
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

A0A5D3DY05 Transposon Ty3-G Gag-Pol polyprotein2.23e-5872.8Show/hide
Query:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ
        ML +LK HLQHAQE+M+KFA++HR +V+FDIGD VYLK+QPYRQQSV KK CEKLS RYF PY +LGRVGEVAY+L LP+TAKIH VFHVSQLKKA+ D+
Subjt:  MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQ

Query:  HQIQPNIAMLNDQMELVLEPENVTQ
        H + P++ ++NDQMELVLEPENV Q
Subjt:  HQIQPNIAMLNDQMELVLEPENVTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGCTATCCTGAAGAGTCATTTGCAACATGCCCAAGAACAAATGAAGAAGTTTGCTGATGTGCACCGTTGCAATGTGATTTTCGACATTGGAGACTGGGTCTATCT
GAAAGTACAACCCTATAGGCAACAGTCGGTAACGAAGAAGCTTTGTGAAAAATTATCTTTCAGATATTTTAGGCCATACATGATCTTGGGTAGAGTTGGAGAAGTAGCTT
ACATGCTGGGCCTTCCAAAAACTGCCAAAATACATCTGGTTTTCCACGTATCACAACTCAAGAAGGCAGTGGAAGACCAACATCAAATTCAACCGAACATAGCAATGCTC
AATGATCAAATGGAGCTGGTGTTAGAACCCGAAAATGTGACCCAAGACACGAAGCAACATGGGAGTTCCTAA
mRNA sequenceShow/hide mRNA sequence
AGTTTATGGACGGCCCCCTCCCCCTATCATTTCCTATGGCCAAGCATCTACAACCCCAAATGATTTAGTGGAATATTAGTTGCAATCGAGAGATGAAATGTTAGCTATCC
TGAAGAGTCATTTGCAACATGCCCAAGAACAAATGAAGAAGTTTGCTGATGTGCACCGTTGCAATGTGATTTTCGACATTGGAGACTGGGTCTATCTGAAAGTACAACCC
TATAGGCAACAGTCGGTAACGAAGAAGCTTTGTGAAAAATTATCTTTCAGATATTTTAGGCCATACATGATCTTGGGTAGAGTTGGAGAAGTAGCTTACATGCTGGGCCT
TCCAAAAACTGCCAAAATACATCTGGTTTTCCACGTATCACAACTCAAGAAGGCAGTGGAAGACCAACATCAAATTCAACCGAACATAGCAATGCTCAATGATCAAATGG
AGCTGGTGTTAGAACCCGAAAATGTGACCCAAGACACGAAGCAACATGGGAGTTCCTAAACGAGATTGGGAGTATTTAGTCCAGTGGAAAGATAAACCAAGACACGAAGC
AACATGAGAGTTCCTAAGCAACGTGGCAGCAACAGAATGAGGTTATTGTGAGGACAAGGTGTCTCTTCTCCATGGGGGTATTGCGAGGCCTCCAATCACACAGTTTACTA
AAGAAAGGGTAAGAAGGAAAATTCAACCTAGGCAACAT
Protein sequenceShow/hide protein sequence
MLAILKSHLQHAQEQMKKFADVHRCNVIFDIGDWVYLKVQPYRQQSVTKKLCEKLSFRYFRPYMILGRVGEVAYMLGLPKTAKIHLVFHVSQLKKAVEDQHQIQPNIAML
NDQMELVLEPENVTQDTKQHGSS