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CsGy5G010860 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G010860
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Genome locationGy14Chr5:11447455..11447826
RNA-Seq ExpressionCsGy5G010860
SyntenyCsGy5G010860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056820.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]9.31e-4573.91Show/hide
Query:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------
        MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      
Subjt:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------

Query:  RQNALLRAVAMDVLN
        R+ A LRAVA DVL 
Subjt:  RQNALLRAVAMDVLN

KAE8648181.1 hypothetical protein Csa_018533 [Cucumis sativus]3.55e-8099.15Show/hide
Query:  RSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMD
        +SICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMD
Subjt:  RSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMD

Query:  VLNFGSLFKMFGKCGVG
        VLNFGSLFKMFGKCGVG
Subjt:  VLNFGSLFKMFGKCGVG

KAG6601987.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.55e-4566.96Show/hide
Query:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------
        +VS+ YR IC+E INVL   DE++I NNFISLFSQ+K S DDP+LK LAP L+ +IVE VLNGLR+WK+AHMFF WASKQH Y+HNCYTF  IA      
Subjt:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------

Query:  RQNALLRAVAMDVLN
        RQNA LRA+A DVLN
Subjt:  RQNALLRAVAMDVLN

XP_011654469.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus]1.53e-5384.35Show/hide
Query:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R
        VSQPYRSICTEVINVL P DETYI NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVLNGL SWKIAHMFFTWASKQH Y+HNC TF AIA      R
Subjt:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R

Query:  QNALLRAVAMDVLNF
        +NA LRAVAMDVLNF
Subjt:  QNALLRAVAMDVLNF

XP_038894372.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida]7.33e-4775.65Show/hide
Query:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R
        VS+PYRSICTEVINV    DET+I +NFISLFSQQK S DDP+LKNLA  L+ RIVETVLNGLRSWK+AHMFFTWASKQH Y+HNCYTF AIA      R
Subjt:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R

Query:  QNALLRAVAMDVLNF
        QNA LRA+A DVLNF
Subjt:  QNALLRAVAMDVLNF

TrEMBL top hitse value%identityAlignment
A0A0A0KL85 Uncharacterized protein6.04e-86100Show/hide
Query:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALL
        MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALL
Subjt:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALL

Query:  RAVAMDVLNFGSLFKMFGKCGVG
        RAVAMDVLNFGSLFKMFGKCGVG
Subjt:  RAVAMDVLNFGSLFKMFGKCGVG

A0A0A0KMI5 Uncharacterized protein6.96e-5484.35Show/hide
Query:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R
        VSQPYRSICTEVINVL P DETYI NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVLNGL SWKIAHMFFTWASKQH Y+HNC TF AIA      R
Subjt:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R

Query:  QNALLRAVAMDVLNF
        +NA LRAVAMDVLNF
Subjt:  QNALLRAVAMDVLNF

A0A1S3BTR3 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial5.49e-4573.91Show/hide
Query:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------
        MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      
Subjt:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------

Query:  RQNALLRAVAMDVLN
        R+ A LRAVA DVL 
Subjt:  RQNALLRAVAMDVLN

A0A5A7UP07 Putative pentatricopeptide repeat-containing protein4.51e-4573.91Show/hide
Query:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------
        MVSQ YRS+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR W+IAHMFFTWASKQ  Y+HNCYTF AIA      
Subjt:  MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------

Query:  RQNALLRAVAMDVLN
        R+ A LRAVA DVL 
Subjt:  RQNALLRAVAMDVLN

A0A6J1CLB5 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial5.03e-4573.91Show/hide
Query:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R
        V + YR ICTEVINVL P DET+I NNFISLFSQ+K S DDP+LK LAP L+ +IVETVLNGLRSWKIAHMFF WASKQ+ Y+HNCYT+ AIA      R
Subjt:  VSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIA------R

Query:  QNALLRAVAMDVLNF
        QNA LRAVAMDVLNF
Subjt:  QNALLRAVAMDVLNF

SwissProt top hitse value%identityAlignment
P0C8Q6 Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial5.8e-1937.59Show/hide
Query:  YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNA
        +R + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG + W +A++FF WASKQ  Y+++ Y + A+      ARQNA
Subjt:  YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNA

Query:  LLRAVAMDVLN---------FGSLFKMFGKCGV
         L+A+ +DVLN         FG   +  G  G+
Subjt:  LLRAVAMDVLN---------FGSLFKMFGKCGV

Arabidopsis top hitse value%identityAlignment
AT5G08310.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.1e-2037.59Show/hide
Query:  YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNA
        +R + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG + W +A++FF WASKQ  Y+++ Y + A+      ARQNA
Subjt:  YRSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNA

Query:  LLRAVAMDVLN---------FGSLFKMFGKCGV
         L+A+ +DVLN         FG   +  G  G+
Subjt:  LLRAVAMDVLN---------FGSLFKMFGKCGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAA
AATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCT
TCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTT
GGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAA
AATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCT
TCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTT
GGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA
Protein sequenceShow/hide protein sequence
MVSQPYRSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNF
GSLFKMFGKCGVG