CuGenDBv2

Gene ID	CsGy5G011110
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Chlororespiratory reduction 3, putative isoform 1
Genome location	Gy14Chr5:11778261..11786964
RNA-Seq Expression	CsGy5G011110
Synteny	CsGy5G011110
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR038931 - Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004142275.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucumis sativus]

2.63e-114

100

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

XP_008464703.1 PREDICTED: probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1 [Cucumis melo]

1.79e-99

90.42

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Query:  MASLFSISFTKNVAFASLNPD--PHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKY
        MASLFSIS TKNVA ASLNP+   HSHSHSPPLKTN AA TIPI  PRLR KLLNP RPS+IEIERAIGGGRFRDADPR+LEEDKKAAFDMFLMSFTGKY
Subjt:  MASLFSISFTKNVAFASLNPD--PHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKY

Query:  EAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        E PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPF+TPFLNELLM
Subjt:  EAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

XP_022942899.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]

2.17e-83

81.1

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MA    IS TKNVA ASLNP     SHSPP KTN AA TIPI NPRLRR+L  P RPS+IEIERAIG GRFRDADPR+LEED+KAAFDMFLMSFTGKYE 
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL
         LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPF+TPFL++LL
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL

XP_023511915.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo]

9.21e-85

81.71

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MA  F IS TKNVA ASLNP     SHSPP KTN AA TIPI NPRLRR+L  P RPS+IEIERAIG GRFRDADPR+LEED+KAAFDMFLMSFTGKYE 
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL
         LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPF+TPFL++LL
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL

XP_038893324.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida]

1.34e-93

86.06

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MAS FSIS TKNV  ASLNP     SHSPP KTN AA TIPINNPRLRR+L  P RPS+IEIERAIGGGRFRDADPR+LEED+KAAFDMFLMSFTGKYE 
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        P+MKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASG+IKLPF+TPFLNELLM
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJA3 Uncharacterized protein

1.27e-114

100

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

A0A1S3CM65 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1

8.67e-100

90.42

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Query:  MASLFSISFTKNVAFASLNPD--PHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKY
        MASLFSIS TKNVA ASLNP+   HSHSHSPPLKTN AA TIPI  PRLR KLLNP RPS+IEIERAIGGGRFRDADPR+LEEDKKAAFDMFLMSFTGKY
Subjt:  MASLFSISFTKNVAFASLNPD--PHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKY

Query:  EAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        E PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPF+TPFLNELLM
Subjt:  EAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

A0A6J1DQ49 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

2.49e-78

78.18

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        +AS   IS TKNVA ASLN    SHS SP  K N  A TIPI N   RR L  P RPS+IEIERAIG GRFRDADPR+LEED+K  FDMFL+SFT KYE 
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
        PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQW+LPIWALSLLVASGVIKLPFSTPFL+ELLM
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

A0A6J1FSN9 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

1.05e-83

81.1

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA
        MA    IS TKNVA ASLNP     SHSPP KTN AA TIPI NPRLRR+L  P RPS+IEIERAIG GRFRDADPR+LEED+KAAFDMFLMSFTGKYE 
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEA

Query:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL
         LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPF+TPFL++LL
Subjt:  PLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL

A0A6J1J6W0 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

4.72e-83

79.64

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Query:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRK---LLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGK
        MA  F IS TKNVA ASLNP     SHSPP KTN AA TIP+NNP+LRR+   L  P RPS+IEIERAIG GRFRDADPR+LEED+KAAFDMFLMSFTGK
Subjt:  MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRK---LLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGK

Query:  YEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL
        YE  LMKKLRETGEWVT+QTETKFQASGK FLLFTFQWVLPIWA SLLVASGVIKLPF+TPFL++LL
Subjt:  YEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELL

SwissProt top hits

e value

%identity

Alignment

Q9ZVE7 Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic

5.6e-25

41.48

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Query:  MASLFSISFTKNVAFASL-NPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNP----------PRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDM
        +++++SI+       ASL N  P     S P K  L + T P   P   R++              +PS+ +IERA G G +RD+   E E D    FD 
Subjt:  MASLFSISFTKNVAFASL-NPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNP----------PRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDM

Query:  FLMSFTGKYEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
         L+    K+E+ + KKLRE GE    +TE K ++SGK  L+FT QW+LPIW +SLLVA GVIKLPFS PFL++L+M
Subjt:  FLMSFTGKYEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

Arabidopsis top hits

e value

%identity

Alignment

AT2G01590.1 chlororespiratory reduction 3

4.0e-26

41.48

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Query:  MASLFSISFTKNVAFASL-NPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNP----------PRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDM
        +++++SI+       ASL N  P     S P K  L + T P   P   R++              +PS+ +IERA G G +RD+   E E D    FD 
Subjt:  MASLFSISFTKNVAFASL-NPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNP----------PRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDM

Query:  FLMSFTGKYEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM
         L+    K+E+ + KKLRE GE    +TE K ++SGK  L+FT QW+LPIW +SLLVA GVIKLPFS PFL++L+M
Subjt:  FLMSFTGKYEAPLMKKLRETGEWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

Sequences

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CDS sequence

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ATGGCTTCTCTCTTCTCCATTTCGTTTACCAAAAATGTGGCTTTCGCTTCACTCAATCCCGACCCCCACTCTCACTCTCACTCTCCTCCTCTCAAAACCAATCTCGCCGC
CCACACCATTCCGATCAACAATCCCCGCCTACGGCGCAAGCTTCTAAACCCTCCTCGCCCCTCCCTCATTGAAATCGAACGTGCTATTGGTGGTGGAAGGTTCAGAGACG
CCGACCCTAGGGAATTGGAAGAAGATAAGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGGAAATATGAAGCGCCACTCATGAAAAAGCTTCGTGAGACAGGG
GAATGGGTAACTAATCAAACTGAAACCAAATTTCAAGCTTCGGGAAAATGGTTTCTGTTGTTTACATTTCAATGGGTTCTTCCAATTTGGGCATTGTCACTTCTCGTGGC
TTCTGGGGTCATTAAGCTACCATTCAGCACTCCATTTCTTAATGAACTTCTCATGTAA

mRNA sequence

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GAAAGTTCTCCTGAACTTTTATTTATAAGAAAATATCTTTAATTTATCAAACTCTGCTTTCTTATCTCTGCCTCTCCAACCCCAATGGCTTCTCTCTTCTCCATTTCGTT
TACCAAAAATGTGGCTTTCGCTTCACTCAATCCCGACCCCCACTCTCACTCTCACTCTCCTCCTCTCAAAACCAATCTCGCCGCCCACACCATTCCGATCAACAATCCCC
GCCTACGGCGCAAGCTTCTAAACCCTCCTCGCCCCTCCCTCATTGAAATCGAACGTGCTATTGGTGGTGGAAGGTTCAGAGACGCCGACCCTAGGGAATTGGAAGAAGAT
AAGAAGGCTGCATTTGACATGTTTTTGATGAGTTTTACGGGGAAATATGAAGCGCCACTCATGAAAAAGCTTCGTGAGACAGGGGAATGGGTAACTAATCAAACTGAAAC
CAAATTTCAAGCTTCGGGAAAATGGTTTCTGTTGTTTACATTTCAATGGGTTCTTCCAATTTGGGCATTGTCACTTCTCGTGGCTTCTGGGGTCATTAAGCTACCATTCA
GCACTCCATTTCTTAATGAACTTCTCATGTAATAAGGCAAATGAAGAGGAAAAGACAAGCTGACAAATGACAAGAAGTGATTGTGAATCGCCTTAGGGGACAGTTTAGAT
TTTCCTTCCACAATTTCTGTTTTCAGTATTAAATCTTGAACTTCTTTTATTTTTATTTTTTTTTCATAAGGCCCGAACTAGT

Protein sequence

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MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLIEIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEAPLMKKLRETG
EWVTNQTETKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM

CsGy5G011110 (gene) of Cucumber (Gy14) v2.1 genome