; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G012265 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G012265
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description40S ribosomal protein S18
Genome locationGy14Chr5:14557084..14558014
RNA-Seq ExpressionCsGy5G012265
SyntenyCsGy5G012265
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1841659.1 unnamed protein product [Ananas comosus var. bracteatus]2.58e-1367.27Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLL
        G Y++ +   A+DM+LRDDLERLK+IRN RGLRHYWV VSV ST RLPV   RLL
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLL

KAA0036697.1 hypothetical protein E6C27_scaffold510G00430 [Cucumis melo var. makuwa]1.75e-1567.24Show/hide
Query:  MEAAAMVVQNE----KGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVD
        MEA  +VV+NE    KG +FFVD +DVEETENSKLEEAF+ VMAT EYNERI+CE ++
Subjt:  MEAAAMVVQNE----KGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVD

KAA0059837.1 hypothetical protein E6C27_scaffold108G001200 [Cucumis melo var. makuwa]5.10e-2677.14Show/hide
Query:  MEAAAMVV--QNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIR
        MEAA +VV  +NEKGF+FFVD +DVEETENSKLE AF  VMATGEY+ERI+CE VDMELRDDLE LK+IR
Subjt:  MEAAAMVV--QNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIR

KAE8648296.1 hypothetical protein Csa_017808 [Cucumis sativus]6.04e-6599.02Show/hide
Query:  MEAAAMVVQNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSK
        MEAAAMVVQNEKGFFFFVDCEDVEETENSKLEEAF+AVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSK
Subjt:  MEAAAMVVQNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSK

Query:  KR
        KR
Subjt:  KR

KAF3650136.1 40S ribosomal protein S18 [Capsicum annuum]7.38e-1162Show/hide
Query:  AVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKK
        A+DM+LRDDLERLK+IRN  GLRHYWVFV +VS ++ P+ +G  L VS +
Subjt:  AVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKK

TrEMBL top hitse value%identityAlignment
A0A0A0KLL6 Uncharacterized protein2.97e-6098.95Show/hide
Query:  VQNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        VQNEKGFFFFVDCEDVEETENSKLEEAF+AVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
Subjt:  VQNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

A0A2G2YUC8 40S ribosomal protein S183.57e-1162Show/hide
Query:  AVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKK
        A+DM+LRDDLERLK+IRN  GLRHYWVFV +VS ++ P+ +G  L VS +
Subjt:  AVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKK

A0A5A7UYV7 Uncharacterized protein2.47e-2677.14Show/hide
Query:  MEAAAMVV--QNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIR
        MEAA +VV  +NEKGF+FFVD +DVEETENSKLE AF  VMATGEY+ERI+CE VDMELRDDLE LK+IR
Subjt:  MEAAAMVV--QNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIR

A0A5D3BVC6 Uncharacterized protein8.48e-1667.24Show/hide
Query:  MEAAAMVVQNE----KGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVD
        MEA  +VV+NE    KG +FFVD +DVEETENSKLEEAF+ VMAT EYNERI+CE ++
Subjt:  MEAAAMVVQNE----KGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVD

A0A6V7QER7 Uncharacterized protein1.25e-1367.27Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLL
        G Y++ +   A+DM+LRDDLERLK+IRN RGLRHYWV VSV ST RLPV   RLL
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLL

SwissProt top hitse value%identityAlignment
P34788 40S ribosomal protein S181.3e-0850.82Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   A+DM+LRDDLERLK+IRN RGLRHYW         +     G+ +GVSKKR
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

P41094 40S ribosomal protein S181.6e-0652Show/hide
Query:  VDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        +D +LRDDLERLK+IR+ RGLRHYW         +     GR +GVSKK+
Subjt:  VDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

Q8ISP0 40S ribosomal protein S183.6e-0644.26Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   ++D +LR+DLERLK+IR  RGLRHYW         +     GR +GVSKK+
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

Q8IT98 40S ribosomal protein S184.7e-0644.26Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   A+D +LR+DLERLK+IR  RGLRHYW         +     GR +GV+KK+
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

Q962R1 40S ribosomal protein S181.0e-0542.62Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +    +D +LR+DLERLK+IR  RG+RHYW         +     GR +GVSKK+
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family9.4e-1050.82Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   A+DM+LRDDLERLK+IRN RGLRHYW         +     G+ +GVSKKR
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

AT1G34030.1 Ribosomal protein S13/S18 family9.4e-1050.82Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   A+DM+LRDDLERLK+IRN RGLRHYW         +     G+ +GVSKKR
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR

AT4G09800.1 S18 ribosomal protein9.4e-1050.82Show/hide
Query:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR
        G+Y++ +   A+DM+LRDDLERLK+IRN RGLRHYW         +     G+ +GVSKKR
Subjt:  GEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCGGCGGCGATGGTAGTTCAGAATGAGAAAGGGTTCTTCTTCTTTGTTGATTGTGAGGATGTTGAAGAAACTGAGAATTCCAAGCTTGAGGAAGCTTTTGATGC
GGTAATGGCAACTGGTGAATACAATGAGAGGATCGATTGCGAAGCTGTTGACATGGAGCTGAGAGATGACTTGGAGCGTTTGAAAAGGATCAGAAACCAACGTGGTCTGA
GGCATTACTGGGTCTTTGTGTCCGTGGTCAGCACACTAAGACTACCGGTCGCCGAGGGAAGACTATTGGGTGTCTCTAAGAAGCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCGGCGGCGATGGTAGTTCAGAATGAGAAAGGGTTCTTCTTCTTTGTTGATTGTGAGGATGTTGAAGAAACTGAGAATTCCAAGCTTGAGGAAGCTTTTGATGC
GGTAATGGCAACTGGTGAATACAATGAGAGGATCGATTGCGAAGCTGTTGACATGGAGCTGAGAGATGACTTGGAGCGTTTGAAAAGGATCAGAAACCAACGTGGTCTGA
GGCATTACTGGGTCTTTGTGTCCGTGGTCAGCACACTAAGACTACCGGTCGCCGAGGGAAGACTATTGGGTGTCTCTAAGAAGCGTTAA
Protein sequenceShow/hide protein sequence
MEAAAMVVQNEKGFFFFVDCEDVEETENSKLEEAFDAVMATGEYNERIDCEAVDMELRDDLERLKRIRNQRGLRHYWVFVSVVSTLRLPVAEGRLLGVSKKR