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CsGy5G012780 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G012780
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionplastid transcriptionally active 6
Genome locationGy14Chr5:15028907..15030623
RNA-Seq ExpressionCsGy5G012780
SyntenyCsGy5G012780
Gene Ontology termsGO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domainsIPR044710 - PLASTID TRANSCRIPTIONALLY ACTIVE protein 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637331.1 hypothetical protein CSA_000002 [Cucumis sativus]1.86e-5667.33Show/hide
Query:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV-------
        +FTQGWDSEMIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSNASKEP IDA RDPLYKSE EVLKV       
Subjt:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV-------

Query:  ---------------------------------TVPGGRDRNRRSDLLVV
                                          VPGGRDR RRSDLLVV
Subjt:  ---------------------------------TVPGGRDRNRRSDLLVV

KAE8648319.1 hypothetical protein Csa_004673 [Cucumis sativus]9.90e-66100Show/hide
Query:  MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLV
        MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLV
Subjt:  MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLV

Query:  V
        V
Subjt:  V

XP_030937036.1 uncharacterized protein LOC115962270 isoform X2 [Quercus lobata]6.70e-5168.85Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDSEM+VDYRINE+EFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP                   EP IDA RDPLYK+E 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLKVTVPGGRDRNRRSDLLVV
        E+ KVTVPGGR+R+R+SDLLV+
Subjt:  EVLKVTVPGGRDRNRRSDLLVV

XP_031745328.1 uncharacterized protein LOC116401683 [Cucumis sativus]1.35e-5466.89Show/hide
Query:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV-------
        +FTQGWDSEMIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSNASKEP IDA RDPLYKSE EVLKV       
Subjt:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV-------

Query:  ---------------------------------TVPGGRDRNRRSDLL
                                          VPGGRDR RRSDLL
Subjt:  ---------------------------------TVPGGRDRNRRSDLL

XP_031745857.1 uncharacterized protein LOC116406303 [Cucumis sativus]5.54e-5392.47Show/hide
Query:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV
        +FTQGWDSEMIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSNASKEP IDA RDPLYKSE EVLKV
Subjt:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKV

TrEMBL top hitse value%identityAlignment
A0A0R0KCM0 Uncharacterized protein1.05e-4664.75Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAP--------------SNASKEPSIDALRDPLYKSEN
        TQGWDS+ ++DY+INE+EFHKI  + CDFFIRK  DP++DVYDFREMYVTPPDTDVY++PKVLAP              S    EP IDA RDPLYK+E 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAP--------------SNASKEPSIDALRDPLYKSEN

Query:  EVLKVTVPGGRDRNRRSDLLVV
        E+LKVT PGGR R+RRSDLLV+
Subjt:  EVLKVTVPGGRDRNRRSDLLVV

A0A1S3BAM8 uncharacterized protein LOC1034876133.62e-4656.79Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDSEMIVDYRINEEEFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP                   EP IDA RDPLYKSE 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLKV----------------------------------------TVPGGRDRNRRSDLLVV
        EVLKV                                        TVPGGRDR+RRSDLLVV
Subjt:  EVLKV----------------------------------------TVPGGRDRNRRSDLLVV

A0A4D9BFC7 Uncharacterized protein3.00e-4768.6Show/hide
Query:  QGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSENE
        QGWDSE IVDYRINE+EFHKI  + CDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP                   EP IDA RDP+YKSE E
Subjt:  QGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSENE

Query:  VLKVTVPGGRDRNRRSDLLVV
        VLKVTVP GRDR+R+ DLLVV
Subjt:  VLKVTVPGGRDRNRRSDLLVV

A0A5A7UA32 Uncharacterized protein8.35e-4656.79Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDSEMIVDYRINEEEFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP                   EP IDA RDPLYKSE 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLKV----------------------------------------TVPGGRDRNRRSDLLVV
        EVLKV                                        TVPGGRDR+RRSDLLVV
Subjt:  EVLKV----------------------------------------TVPGGRDRNRRSDLLVV

A0A5C7HA15 Uncharacterized protein8.17e-4664.52Show/hide
Query:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKS
        +FTQGWDSEM+VDYRI+E+EFHKIS M CDFFIRK  DP++DVYDFREMYVTPPDTD+YAVPKVLAP                   EP IDA RDP+YKS
Subjt:  MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKS

Query:  ENEVLKVTVPGGRDRNRRSDLLVV
        + E+ KVT+P  R+R+R+SDLLV+
Subjt:  ENEVLKVTVPGGRDRNRRSDLLVV

SwissProt top hitse value%identityAlignment
Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic1.5e-3448.77Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDS+M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP                   EP IDA RDPLYKSE 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV
        E+ K                                        VTVPGGR R+R+ DLLV+
Subjt:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV

Arabidopsis top hitse value%identityAlignment
AT1G21600.1 plastid transcriptionally active 61.1e-3548.77Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDS+M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP                   EP IDA RDPLYKSE 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV
        E+ K                                        VTVPGGR R+R+ DLLV+
Subjt:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV

AT1G21600.2 plastid transcriptionally active 61.1e-3548.77Show/hide
Query:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN
        TQGWDS+M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP                   EP IDA RDPLYKSE 
Subjt:  TQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNAS--------------KEPSIDALRDPLYKSEN

Query:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV
        E+ K                                        VTVPGGR R+R+ DLLV+
Subjt:  EVLK----------------------------------------VTVPGGRDRNRRSDLLVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACACAGGGATGGGATTCAGAGATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTGATTTCTTCATTAGGAAGTCGTC
GGATCCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGCCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAAC
CATCTATTGATGCACTTAGAGATCCATTATACAAGTCCGAAAATGAGGTTCTTAAGGTCACAGTTCCAGGAGGAAGAGATAGGAACAGAAGAAGCGACTTGCTTGTAGTT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCACACAGGGATGGGATTCAGAGATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTGATTTCTTCATTAGGAAGTCGTC
GGATCCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGCCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAAC
CATCTATTGATGCACTTAGAGATCCATTATACAAGTCCGAAAATGAGGTTCTTAAGGTCACAGTTCCAGGAGGAAGAGATAGGAACAGAAGAAGCGACTTGCTTGTAGTT
TGA
Protein sequenceShow/hide protein sequence
MFTQGWDSEMIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV