CuGenDBv2

Gene ID	CsGy5G013016
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA topoisomerase 2-binding protein 1
Genome location	Gy14Chr5:16539641..16540663
RNA-Seq Expression	CsGy5G013016
Synteny	CsGy5G013016
Gene Ontology terms	GO:0016853 - isomerase activity (molecular function)
InterPro domains	IPR001357 - BRCT domain IPR036420 - BRCT domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637333.1 hypothetical protein CSA_000004 [Cucumis sativus]

2.38e-87

98.46

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVI KNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEMAKLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

XP_008444202.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo]

5.66e-76

96.15

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

XP_016899871.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo]

9.79e-76

96.15

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

XP_031740436.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus]

2.37e-77

97.69

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQE YRVLPFSGLNISVSGIPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

XP_031745331.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus]

2.87e-79

98.46

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVI KNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEMAKLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAL1 DNA topoisomerase 2-binding protein 1 isoform X3

2.74e-76

96.15

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X1

4.89e-76

96.15

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X2

4.74e-76

96.15

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLIC
        GE KEM KLILQNGGRYSADLTRKCTHLIC
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLIC

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X2

4.50e-73

95.38

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  G-ECKEMAKLILQNGGRYSADLTRKCTHLI
        G E KEM KLILQNGGRYSADLTRKCTHLI
Subjt:  G-ECKEMAKLILQNGGRYSADLTRKCTHLI

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X2

1.10e-74

96.12

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDGVKILASGFQEDEK EIGKLVSAMGGVL+TKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVS IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLI
        GE KEM KLILQNGGRYSADLTRKCTHLI
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G77320.1 transcription coactivators

1.7e-43

65.89

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDG+K+LASGF  DEKV+I +LV++MGGVL ++AS DV+FVI KN LAAKYKWALN  KKPIV+ +WL +CW EHRVVPQE Y++ PFSGL I V+ IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKCTHLI
         E K M K+I + GG YSA+LT+ CTHLI
Subjt:  GECKEMAKLILQNGGRYSADLTRKCTHLI

AT1G77320.2 transcription coactivators

4.5e-41

64.8

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Query:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA
        MDG+K+LASGF  DEKV+I +LV++MGGVL ++AS DV+FVI KN LAAKYKWALN  KKPIV+ +WL +CW EHRVVPQE Y++ PFSGL I V+ IPA
Subjt:  MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPA

Query:  GECKEMAKLILQNGGRYSADLTRKC
         E K M K+I + GG YSA+LT+ C
Subjt:  GECKEMAKLILQNGGRYSADLTRKC

Sequences

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CDS sequence

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ATGGATGGTGTGAAAATCTTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGA
TGTCAGTTTTGTTATCGCGAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTG
AACATCGTGTTGTGCCTCAGGAGGGATATCGGGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTGGAATTCCTGCAGGTGAGTGCAAGGAGATGGCAAAGCTTATC
TTGCAAAATGGTGGAAGATATTCTGCCGATCTCACAAGAAAGTGTACACATTTGATATGTGA

mRNA sequence

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Protein sequence

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MDGVKILASGFQEDEKVEIGKLVSAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSGIPAGECKEMAKLI
LQNGGRYSADLTRKCTHLICX

CsGy5G013016 (gene) of Cucumber (Gy14) v2.1 genome