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CsGy5G013018 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G013018
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationGy14Chr5:16541839..16542400
RNA-Seq ExpressionCsGy5G013018
SyntenyCsGy5G013018
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR036420 - BRCT domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637340.1 hypothetical protein CSA_000011 [Cucumis sativus]5.16e-86100Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK
        LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK
Subjt:  LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK

XP_031739410.1 DNA topoisomerase 2-binding protein 1-like [Cucumis sativus]6.72e-5393.88Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA
        +DVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEMQK+VNMILRGGG RYMLFNDKLTHII 
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA

XP_031741714.1 uncharacterized protein LOC116403909 [Cucumis sativus]2.64e-4991.84Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA
        MDVEVTLSQSTPMFS ASHFINEVDVEV VAMGRNEENTVN+LANDF SEENDLYLSACRIKVVGFEASEMQKIVNMI RGGG RY+LFNDKLTHII 
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA

XP_031745331.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus]1.79e-5597.06Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIA  
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  LK
        L+
Subjt:  LK

XP_031745332.1 uncharacterized protein LOC116405488 [Cucumis sativus]1.22e-8499.23Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVN LANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK
        LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK
Subjt:  LKIVIVRRRRSLFLVDTWHMMNLFLKHLVK

TrEMBL top hitse value%identityAlignment
A0A1S3BAL1 DNA topoisomerase 2-binding protein 1 isoform X31.19e-4890.1Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  L
        L
Subjt:  L

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X11.31e-4890.1Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  L
        L
Subjt:  L

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X21.31e-4890.1Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  L
        L
Subjt:  L

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X21.30e-4890.1Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  L
        L
Subjt:  L

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X21.34e-4890.1Show/hide
Query:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG
        MDVE TLSQST MFSDASHFINEVDVEVPVA GRNEENTVN LANDF SEENDLYLSACRIKVVGFEASEM+KIVNMILRGGG RYMLFNDKLTHII   
Subjt:  MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATG

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators7.2e-1556.45Show/hide
Query:  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHII
        E+N     A D  SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGG RYML N+++THI+
Subjt:  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHII

AT1G77320.2 transcription coactivators7.2e-1556.45Show/hide
Query:  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHII
        E+N     A D  SE+NDLYLS CRI ++GFEASEM+K+  ++ RGGG RYML N+++THI+
Subjt:  EENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTGAAGTTACTCTTTCACAGAGCACGCCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGA
AAACACTGTTAATTACCTTGCAAATGACTTTCCGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGA
TTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGA
TCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCTAGTAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTGAAGTTACTCTTTCACAGAGCACGCCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGA
AAACACTGTTAATTACCTTGCAAATGACTTTCCGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCAGAAGA
TTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGA
TCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCTAGTAAAATGA
Protein sequenceShow/hide protein sequence
MDVEVTLSQSTPMFSDASHFINEVDVEVPVAMGRNEENTVNYLANDFPSEENDLYLSACRIKVVGFEASEMQKIVNMILRGGGFRYMLFNDKLTHIIATGLKIVIVRRRR
SLFLVDTWHMMNLFLKHLVK