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CsGy5G013030 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G013030
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionplastid transcriptionally active 6
Genome locationGy14Chr5:16556460..16558074
RNA-Seq ExpressionCsGy5G013030
SyntenyCsGy5G013030
Gene Ontology termsGO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domainsIPR044710 - PLASTID TRANSCRIPTIONALLY ACTIVE protein 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637331.1 hypothetical protein CSA_000002 [Cucumis sativus]3.77e-8195.49Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
        GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP

Query:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        LYKSEKEVLKVFLTKHFK      PEFVLDFEK
Subjt:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

KAE8648326.1 hypothetical protein Csa_023109, partial [Cucumis sativus]3.76e-7472.25Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK----------
        GS DVGDENISIVQSKSF+FTQGWDSEMIVD+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVTPPDTDVYVVPKVL PSNASK          
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK----------

Query:  ------------EPPIDAPRDPLYKSEKEVLKV------------------FLTKHFKNRRLWDPEFVLDFEK
                    EPPIDAPRDPLYKSEKEVLKV                  FLTKHFKN+RLWDPEFVLDFEK
Subjt:  ------------EPPIDAPRDPLYKSEKEVLKV------------------FLTKHFKNRRLWDPEFVLDFEK

XP_031745328.1 uncharacterized protein LOC116401683 [Cucumis sativus]1.91e-8095.49Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
        GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP

Query:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        LYKSEKEVLKVFLTKHFK      PEFVLDFEK
Subjt:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

XP_031745857.1 uncharacterized protein LOC116406303 [Cucumis sativus]4.89e-8999.25Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
        GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASKEPPIDAPRDP

Query:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        LYKSEKEVLKVFLTKHFKNRRLWDPEF+LDFEK
Subjt:  LYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

XP_038896770.1 uncharacterized protein LOC120085024 [Benincasa hispida]2.85e-6776.87Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------
        GSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVTPPDTDVY +PKVLAP               
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------

Query:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
            EPPIDAPRDPLYKSEKEVLKVFLTKHF+NRRL DPEFVLDFE+
Subjt:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

TrEMBL top hitse value%identityAlignment
A0A1S3BAM8 uncharacterized protein LOC1034876131.38e-6776.87Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------
        GSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVTPPDTDVY +PKVLAP               
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------

Query:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
            EPPIDAPRDPLYKSEKEVLKVFLTKHF+NRRL DPEFVLDFE+
Subjt:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

A0A314UK16 Uncharacterized protein1.45e-6069.72Show/hide
Query:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAP----------SNAS----KE
        G+E+I++VQSKSFVFTQGWDSEM+VDYRINE+EFHKIS + C FFIRK  D ++DVYDFREMYVTPPDTDVY +P+VLAP          S+ S     E
Subjt:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAP----------SNAS----KE

Query:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        PPIDAPRDPLYKSE++VLKV+LTKH++NRRL DP+FVLDFE+
Subjt:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

A0A5A7UA32 Uncharacterized protein3.81e-6776.87Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------
        GSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVTPPDTDVY +PKVLAP               
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------

Query:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
            EPPIDAPRDPLYKSEKEVLKVFLTKHF+NRRL DPEFVLDFE+
Subjt:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

A0A6J1F6A7 uncharacterized protein LOC1114425724.26e-6776.19Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------
        GS+ VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVTPPDTDVY +PKVLAP               
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------

Query:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
            EPPIDAPRDPLYKSEKEVLKVFLTKHF+NRRL DPEFVLDFE+
Subjt:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

A0A6J1IGR4 uncharacterized protein LOC1114770764.51e-6776.19Show/hide
Query:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------
        GS+ VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVTPPDTDVY +PKVLAP               
Subjt:  GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS-----------

Query:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
            EPPIDAPRDPLYKSEKEVLKVFLTKHF+NRRL DPEFVLDFE+
Subjt:  ---KEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

SwissProt top hitse value%identityAlignment
Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic1.9e-4764.79Show/hide
Query:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE
        GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVTPPDTD+Y +P+VLAP                   E
Subjt:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE

Query:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        PPIDAPRDPLYKSE+E+ KVFLTKH++NRR  DPEFVLD E+
Subjt:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

Arabidopsis top hitse value%identityAlignment
AT1G21600.1 plastid transcriptionally active 61.4e-4864.79Show/hide
Query:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE
        GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVTPPDTD+Y +P+VLAP                   E
Subjt:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE

Query:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        PPIDAPRDPLYKSE+E+ KVFLTKH++NRR  DPEFVLD E+
Subjt:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK

AT1G21600.2 plastid transcriptionally active 61.4e-4864.79Show/hide
Query:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE
        GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVTPPDTD+Y +P+VLAP                   E
Subjt:  GDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNAS--------------KE

Query:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK
        PPIDAPRDPLYKSE+E+ KVFLTKH++NRR  DPEFVLD E+
Subjt:  PPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGGTGATAGTGGTGGTCCCGATGACTACGACATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCCTAGTCGCCG
CGATAGCTGCAACAGCGGTTCCGACGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATT
ATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATTCCAACAGCGATGTTTATGATTTTAGAGAGATGTAT
GTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGA
AAAGGAGGTTCTTAAGGTTTTCTTGACGAAGCACTTCAAAAATCGAAGGCTGTGGGACCCTGAATTTGTCCTAGATTTTGAGAAATATATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGGTGATAGTGGTGGTCCCGATGACTACGACATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCCTAGTCGCCG
CGATAGCTGCAACAGCGGTTCCGACGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATT
ATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATTCCAACAGCGATGTTTATGATTTTAGAGAGATGTAT
GTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGA
AAAGGAGGTTCTTAAGGTTTTCTTGACGAAGCACTTCAAAAATCGAAGGCTGTGGGACCCTGAATTTGTCCTAGATTTTGAGAAATATATGTAA
Protein sequenceShow/hide protein sequence
MATVIVVVPMTTTWTMRKWRNSTATKISTSSTIPSRRDSCNSGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMY
VTPPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVFLTKHFKNRRLWDPEFVLDFEKYM