; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G013040 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G013040
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationGy14Chr5:16573922..16579108
RNA-Seq ExpressionCsGy5G013040
SyntenyCsGy5G013040
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR001357 - BRCT domain
IPR036420 - BRCT domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637417.1 hypothetical protein CSA_021603 [Cucumis sativus]4.52e-71100Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
KAE8651483.1 hypothetical protein Csa_023682, partial [Cucumis sativus]4.44e-6796.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSH V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
XP_031740454.1 DNA topoisomerase 2-binding protein 1-A-like [Cucumis sativus]5.02e-6796.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSH V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
XP_031745443.1 DNA topoisomerase 2-binding protein 1-A-like isoform X2 [Cucumis sativus]4.04e-6796.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSH V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
XP_031745444.1 DNA topoisomerase 2-binding protein 1-A-like isoform X3 [Cucumis sativus]3.57e-6796.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSH V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
TrEMBL top hitse value%identityAlignment
A0A1S3BAL1 DNA topoisomerase 2-binding protein 1 isoform X33.30e-6296.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X14.56e-6296.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X24.48e-6296.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X24.43e-6296.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X24.98e-6296.97Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        MKQKVHFTVECHGGIPRSTDVHSTYVSSHWV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators2.1e-3059.57Show/hide
Query:  HFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        HFT+ECHGG   +    + YVSSHWV++CL+ GCL   + HILYSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KVT
Subjt:  HFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
AT1G77320.2 transcription coactivators2.1e-3059.57Show/hide
Query:  HFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT
        HFT+ECHGG   +    + YVSSHWV++CL+ GCL   + HILYSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KVT
Subjt:  HFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTACGTGTCAAGTCATTGGGTTCAATCATGTTTAGAGGA
TGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGTTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATA
AAGACAGAGTATTGTTAAGAAATTTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCATCTAA
mRNA sequenceShow/hide mRNA sequence
CAAACGTACATCAACTTTTGACTTCCATAATCCCAAATATTTTTTATGTATATTCTGAGATCATATTTGAAATTCTCCTACTAGAGAGCTGAAATTGTTGAATGGATAAA
TCAAGGGGGAGGCGAGGTTGTTGAAGATCACATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTACGTGT
CAAGTCATTGGGTTCAATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGTTGTGTCCCTTTGCCTGGATTTGAAAAC
ATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATTTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCAT
CTAATATGCAAGTTCACGGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAAGGAACTTTGCG
ATTTTGTTGCTTTTCAATTATATATGTTCATATACATGCATATCCTGATAGAATTCTAGACCCATTGTGTTTATATTTCTTCTCTTAGATATGGAATGATTTTGTTTGAA
TACAAAATTTTCAGAGAAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGTGACATGCTTGTGCACTGTCAGCCAATTTCCTACTCAA
GCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTGCCATTCTGAGAGACCAATCAGCTGGAACTAACAGTAGCTCTATAGGAGCAGCTGAACG
AATAAGTTCTACTAAAAGAAGGCGCAAGTTATTTGACGAAGCCATACAAAAGCGTTCAGTTTTTGTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAA
ACAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATCGAGGACTTGTTGAGCAGACAACTAAGATTCAAGATCAGAAGTCACCTGGA
AAGACTGGCTGCGACAAAAGTGTATCCTTCTATTAGGTTTAAACTAACTAGTGGACATGGCCATTCTTAGCTCTTACATCCAAAGCAGTTAGTCGTACGAGGACAATTTC
TTTTTCTTTGTCTGTTTTACTGAGTCAAAAGCAGCCTTTAGGTTTCATTATTACATTCTGGTGGAGCGAGAGAAAGAACAGAATCGTCAAAGGGTGTGAGAGTCCTTATT
GCGATGTTTGATCCCTTACTGAATTCTTTGTTTCTTCTGGGACATTTGTTTTGTTATTATTTGCTAGACCTTATCTCTTTATTGGAGCCTTTTTTGCACTTTGGTTCTTT
TTGTGGGCTTTCTTTTTTATGTCCGTTTATTCTTTCATTTTTTCTAAATGAAAATTAAGTTTTTTTTTTTAAAAAAGAAAAAGTTATTAAATGCATCTGCATTTAAATAG
TATCTAGTGATAGACTTTAGTATCTTATCGTTGGTTCCCACTCCACCTAATCTATTATTACATGCATCTGTGTGCTTGTGTTCTAATTCCTTCTAAACTATTTTTACGGG
ATTTTCATAGCCATGTCTTTGAAGAACTTGAAGAACTCCCCCTTTTCCTTCCCCAGAAGAAAGTTCACTCACAGTTCATCATCAAAAACCACCGTAGCCGATCGTGGGGA
TCCTAACGATCCCCGAGTAAGATTAAAACGTGATTGCGTTGGGATTATGGCTGCTTTCAAACTTGGGCAGCCTTTTCATCATGTTGTAATTCTAGCCAACACCCATCTTT
GTTGGGATCCAGAATGGGCTGATGTGAAGCTCGCTCAGGCTAAGTATCTTTATCACGCCTAGCTCGATTCAAATCTTTAGTTGCTGAAAAGTTTGAATGCACACCCTCAG
TACTTTTGGCTGGCGATTTCAATTCAACCCCAGGAGATAAGGTTTGTATTCTATCTCGATTTATCATTTGCATTGAATTTCCTCTTTCTGAAGATATGGTATATAGCTAT
TTCATTGTTATTATCATGTCTAAATTACAAGTTTAGTCCCTTGAACTTTGTGTCTCCTTGATTGCTTAACTTTCCAAAAGTGTCTAAAAGATCTGCATGCTTTCAATTTT
GTGTAACCAAGTCTCAAAATTTTAAATTCATGCATTTAATAGGTTCTGTTATACAGGGTAAATTTAGATCTATTAAAAACATAATTGAAAATTCATAGATTTATTGGACA
CAAAATTGAAAGTTTAGGGACCAAGTAGATACTGTTTCAAGTTTAGGATTTTCCATACAGAATTGAAATTTTAGAGATCAAATAGATACAGACCTCAAAATTAAGGACTA
AACTTACAATTTAACCAATTGTTATTGAGTGTATAGACTTATTTTTAGGCGTAGTGCTACTAGAACGAACTGATGACCATAAACTCACAGGGTGACATGAAAAGTACTAT
TGTATGGAATCTCATATAGCAGAAACATATAACAGAAAAATATTTAGATAGCTTATATTATCTTTCGAAAAATATAAACTACATAGTTCAAAACGAAGATGAACGGTAAA
TAGTTTGATGCTATAACGTTCTTAACCACACCACCTTTGAAAATAAGTAATCTAGAAACTTACTGGTTTCTGTTGGTGCAAATGTGAACCGAAGTTCAAAGATTGGTCTC
TTATTTTTTTGTCTCTATACTTTCCTCCTCATTCTGCTTCATGAGGAGAAAGGCAATCTGTCAAAGAGTTGAAGGAGAAGACAGAAGAACTTAAAGGTCACATGAAGACT
AAAAGTTAGGTAATTTTTTGAAAACTTTTTTCTTAGTCTTGGTTAGTTTTAGTGGTATTTGTTAACAGGCTGAGACATACTCTTGTATGCCAAGGCTGGGTGGCCAATTC
AATGGATGGCCTGAGACGGTGAAATGACGAGTGTAGAACAAAGTAGACAATCGAGCAGATTTACAAGTAGAGGATGGTGTTTGGTCTTACTCTAAAGCTACTGCTAGAAA
GGTGGTTCTCCCTTTATTTACACATGTTATCTATATTTAATTACTGTTTTTATGTGATGGTGAATAAATATTTAAGTCGTTTCAAGTTTGTACATCATGCTTGAGTTAAT
ACATTTCCCAACTCGCACTAATTTTAAAGTTGAG
Protein sequenceShow/hide protein sequence
MKQKVHFTVECHGGIPRSTDVHSTYVSSHWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTI