; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G013060 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G013060
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionplastid transcriptionally active 6
Genome locationGy14Chr5:16598496..16600190
RNA-Seq ExpressionCsGy5G013060
SyntenyCsGy5G013060
Gene Ontology termsGO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domainsIPR044710 - PLASTID TRANSCRIPTIONALLY ACTIVE protein 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637331.1 hypothetical protein CSA_000002 [Cucumis sativus]7.05e-10385.34Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSK
        PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKV                     FLTKHFK      PEF+LDFEKIYVIDSK
Subjt:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSK

KAE8648326.1 hypothetical protein Csa_023109, partial [Cucumis sativus]6.28e-10977.13Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIVD+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNASK----------------------EPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEF
        PPDTDVYVVPKVL PSNASK                      EPPIDAPRDPLYKSEKEVLKV       ++      +    VFLTKHFKN+RLWDPEF
Subjt:  PPDTDVYVVPKVLAPSNASK----------------------EPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEF

Query:  ILDFEKIYVIDSKTKSITRAKVL
        +LDFEKIYVIDSKTKSITRAKVL
Subjt:  ILDFEKIYVIDSKTKSITRAKVL

XP_031745328.1 uncharacterized protein LOC116401683 [Cucumis sativus]3.81e-10285.34Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSK
        PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKV                     FLTKHFK      PEF+LDFEKIYVIDSK
Subjt:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSK

XP_031745857.1 uncharacterized protein LOC116406303 [Cucumis sativus]9.34e-11889.55Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSKTKSITRAKV
        PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKV                     FLTKHFKNRRLWDPEFILDFEKIYVIDSKTKSITRAKV
Subjt:  PPDTDVYVVPKVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSKTKSITRAKV

Query:  L
        L
Subjt:  L

XP_038896770.1 uncharacterized protein LOC120085024 [Benincasa hispida]1.93e-9171.3Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTDVY +PKVLAP                   EPPIDAPRDPLYKSEKEVLKV                     FLTKHF+NRRL DPEF+LDFE+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRAKVLV
Subjt:  VIDSKTKSITRAKVLV

TrEMBL top hitse value%identityAlignment
A0A1S3BAM8 uncharacterized protein LOC1034876132.66e-9170.83Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTDVY +PKVLAP                   EPPIDAPRDPLYKSEKEVLKV                     FLTKHF+NRRL DPEF+LDFE+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRA+VLV
Subjt:  VIDSKTKSITRAKVLV

A0A2P5CGP4 Plastid transcriptionally active protein5.96e-8063.13Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIV-QSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYV
        MDDEE+EE ++ KDFDIEYDPL AA AA+A  D   DE+IS+V QS++FV TQGWDSEM+VDYRINE+EFHKIS  HC FFIRK  D ++DVYDFREMYV
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIV-QSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYV

Query:  TPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKI
        TPPDTDVY +PKVLAP                   EPPIDAPRDP+YKSE+E++KV                     FLTKH++NRRL DPEF+LDFE+I
Subjt:  TPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKI

Query:  YVIDSKTKSITRAKVLV
        YVIDSKTKSITRAKVLV
Subjt:  YVIDSKTKSITRAKVLV

A0A5A7UA32 Uncharacterized protein8.20e-9170.83Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGSD VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTDVY +PKVLAP                   EPPIDAPRDPLYKSEKEVLKV                     FLTKHF+NRRL DPEF+LDFE+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRA+VLV
Subjt:  VIDSKTKSITRAKVLV

A0A6J1F6A7 uncharacterized protein LOC1114425724.11e-8668.49Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREM
        M D+EMEE ++ KDFDIEYD L AA AAAA   GS+ VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREM
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREM

Query:  YVTPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFE
        YVTPPDTDVY +PKVLAP                   EPPIDAPRDPLYKSEKEVLKV                     FLTKHF+NRRL DPEF+LDFE
Subjt:  YVTPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFE

Query:  KIYVIDSKTKSITRAKVLV
        +IYVIDSKTKSITRAKVLV
Subjt:  KIYVIDSKTKSITRAKVLV

A0A6J1IGR4 uncharacterized protein LOC1114770764.38e-8668.49Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREM
        M D+EMEE ++ KDFDIEYD L AA AAAA   GS+ VGDENISIVQSKSFV TQGWDSEMIVDYRINEEEFHKIS +HC FFIRK  D ++DVYDFREM
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREM

Query:  YVTPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFE
        YVTPPDTDVY +PKVLAP                   EPPIDAPRDPLYKSEKEVLKV                     FLTKHF+NRRL DPEF+LDFE
Subjt:  YVTPPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFE

Query:  KIYVIDSKTKSITRAKVLV
        +IYVIDSKTKSITRAKVLV
Subjt:  KIYVIDSKTKSITRAKVLV

SwissProt top hitse value%identityAlignment
Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic4.8e-6460.19Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G    GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTD+Y +P+VLAP                   EPPIDAPRDPLYKSE+E+ K                     VFLTKH++NRR  DPEF+LD E+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRA+VLV
Subjt:  VIDSKTKSITRAKVLV

Arabidopsis top hitse value%identityAlignment
AT1G21600.1 plastid transcriptionally active 63.4e-6560.19Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G    GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTD+Y +P+VLAP                   EPPIDAPRDPLYKSE+E+ K                     VFLTKH++NRR  DPEF+LD E+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRA+VLV
Subjt:  VIDSKTKSITRAKVLV

AT1G21600.2 plastid transcriptionally active 63.4e-6560.19Show/hide
Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G    GD +I+ VQSKSF+ TQGWDS+M+VDYRINE+EFHK+S M C FFIRK  D ++DVYDFREMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVT

Query:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY
        PPDTD+Y +P+VLAP                   EPPIDAPRDPLYKSE+E+ K                     VFLTKH++NRR  DPEF+LD E+IY
Subjt:  PPDTDVYVVPKVLAPSNAS--------------KEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIY

Query:  VIDSKTKSITRAKVLV
        VIDSKTKSITRA+VLV
Subjt:  VIDSKTKSITRAKVLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCCCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGACGACGTTGGCGA
TGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTT
TTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATTCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCC
AAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTAAGGATGGGAATGTGGAC
AAAAGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCGAAGGCTGTGGGACCCTGAATTTATCCTAGATTTTGAGA
AAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCCTGGTAAGACTTTTTTTTCTTGGCTTTTGCACTGTTTCAGTAATAAGTGAAGTTCTAAAC
TTCAAGTCGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCCCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGACGACGTTGGCGA
TGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTT
TTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATTCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCC
AAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTAAGGATGGGAATGTGGAC
AAAAGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCGAAGGCTGTGGGACCCTGAATTTATCCTAGATTTTGAGA
AAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCCTGGTAAGACTTTTTTTTCTTGGCTTTTGCACTGTTTCAGTAATAAGTGAAGTTCTAAAC
TTCAAGTCGAATTGA
Protein sequenceShow/hide protein sequence
MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVP
KVLAPSNASKEPPIDAPRDPLYKSEKEVLKVRMGMWTKDIRMCKQFIYLLQVFLTKHFKNRRLWDPEFILDFEKIYVIDSKTKSITRAKVLVRLFFLGFCTVSVISEVLN
FKSN