CuGenDBv2

Gene ID	CsGy5G013110
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	plastid transcriptionally active 6
Genome location	Gy14Chr5:16683181..16684776
RNA-Seq Expression	CsGy5G013110
Synteny	CsGy5G013110
Gene Ontology terms	GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domains	IPR044710 - PLASTID TRANSCRIPTIONALLY ACTIVE protein 6

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637331.1 hypothetical protein CSA_000002 [Cucumis sativus]

6.73e-88

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIVD+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK
        PPDTDVYVVPKVL PSNASKEPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK

KAE8648326.1 hypothetical protein Csa_023109, partial [Cucumis sativus]

3.49e-88

86.42

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNASK----------------------EPPIDAPRDPLYKSEKEVLK
        PPDTDVYVVPKVLTPSNASK                      EPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNASK----------------------EPPIDAPRDPLYKSEKEVLK

XP_031745328.1 uncharacterized protein LOC116401683 [Cucumis sativus]

3.48e-87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIVD+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK
        PPDTDVYVVPKVL PSNASKEPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK

XP_031745857.1 uncharacterized protein LOC116406303 [Cucumis sativus]

2.04e-87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIVD+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK
        PPDTDVYVVPKVL PSNASKEPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNASKEPPIDAPRDPLYKSEKEVLK

XP_038896770.1 uncharacterized protein LOC120085024 [Benincasa hispida]

4.09e-66

72.73

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK
        PPDTDVY +PKVL P                   EPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L1W3 Uncharacterized protein

1.51e-57

80.87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP+SDVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTP
        PPDTDVY +PKVL P
Subjt:  PPDTDVYVVPKVLTP

A0A1S3BAM8 uncharacterized protein LOC103487613

1.98e-66

72.73

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK
        PPDTDVY +PKVL P                   EPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK

A0A5A7UA32 Uncharacterized protein

5.42e-66

72.73

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK
        PPDTDVY +PKVL P                   EPPIDAPRDPLYKSEKEVLK
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK

A0A6J1F6A7 uncharacterized protein LOC111442572

4.05e-61

69.43

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEM
        M D+EMEE ++ KDFDIEYD L AA AAAA   GS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EM
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEM

Query:  YVTPPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK
        YVTPPDTDVY +PKVL P                   EPPIDAPRDPLYKSEKEVLK
Subjt:  YVTPPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK

A0A6J1IGR4 uncharacterized protein LOC111477076

4.28e-61

69.43

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEM
        M D+EMEE ++ KDFDIEYD L AA AAAA   GS  VGDENISIVQSKSF+ TQGWDSEMIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EM
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAA---GSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEM

Query:  YVTPPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK
        YVTPPDTDVY +PKVL P                   EPPIDAPRDPLYKSEKEVLK
Subjt:  YVTPPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLK

SwissProt top hits

e value

%identity

Alignment

Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic

8.4e-48

57.87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+VD+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE
        PPDTD+Y +P+VL P                   EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G21600.1 plastid transcriptionally active 6

6.0e-49

57.87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+VD+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE
        PPDTD+Y +P+VL P                   EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE

AT1G21600.2 plastid transcriptionally active 6

6.0e-49

57.87

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Query:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT
        MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+VD+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVT
Subjt:  MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVT

Query:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE
        PPDTD+Y +P+VL P                   EPPIDAPRDPLYKSE+E+ K   + K Y+N +T    F   L+E
Subjt:  PPDTDVYVVPKVLTPSNAS--------------KEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDE

Sequences

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CDS sequence

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ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGA
TGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTT
TTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCC
AAAGTTCTTACTCCCTCCAATGCCTCAAAAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGATGGGAATGTGGACAAAGG
ATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGA

mRNA sequence

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Protein sequence

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MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVP
KVLTPSNASKEPPIDAPRDPLYKSEKEVLKDGNVDKGYKNVQTIHLSFAGFLDEALQKSKAVGP

CsGy5G013110 (gene) of Cucumber (Gy14) v2.1 genome