; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G013600 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G013600
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRibosome biogenesis protein BRX1-like
Genome locationGy14Chr5:17771864..17773447
RNA-Seq ExpressionCsGy5G013600
SyntenyCsGy5G013600
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR007109 - Brix domain
IPR026532 - Ribosome biogenesis protein BRX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653380.1 hypothetical protein Csa_007652 [Cucumis sativus]2.10e-9095.49Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

KAG7037539.1 Ribosome biogenesis protein BRX1-like 1 [Cucurbita argyrosperma subsp. argyrosperma]1.47e-8793.23Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRP+LTFSSNFDKDVHWKLLKE+I+QIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

XP_008450669.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]1.28e-8895.49Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

XP_011659901.2 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus]1.32e-8895.49Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

XP_031741723.1 ribosome biogenesis protein BRX1 homolog 2-like [Cucumis sativus]2.59e-10598.66Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWFWNYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQLFDNLGLHFFTLFF
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQLFDNLGLHFFTLFF
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQLFDNLGLHFFTLFF

TrEMBL top hitse value%identityAlignment
A0A1S3BQS3 ribosome biogenesis protein BRX1-like6.18e-8995.49Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

A0A5D3CG95 Ribosome biogenesis protein BRX1-like6.18e-8995.49Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

A0A6J1EW75 ribosome biogenesis protein BRX1 homolog 1-like7.13e-8893.23Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRP+LTFSSNFDKDVHWKLLKE+I+QIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

A0A6J1HZ18 ribosome biogenesis protein BRX1 homolog 1-like3.84e-8792.48Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRPILTFSSNFDKD HWKLLKE+I+QIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQI+V HNESDKVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

A0A6J1I0V9 ribosome biogenesis protein BRX1 homolog 1-like1.65e-8692.48Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRP+LTFSSNFDKDVHWKLLKE+I+QIFGT KEHRHSKPYHDHVFVFSIVDDHIWF NYQISV HNES KVARGGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

SwissProt top hitse value%identityAlignment
Q3SZZ0 Ribosome biogenesis protein BRX1 homolog3.5e-3454.07Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        + ELK+TGN LKGSRP+L+F   FD+  H+ LLKE++IQIF T + H  S+P+ DHVF F+I+D+ IWF N+QI     E D           L+E+GPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQ
        F LN IKIF GSFGGPTLYENP Y SPN  R +++
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQ

Q8TDN6 Ribosome biogenesis protein BRX1 homolog3.5e-3454.07Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        + ELK+TGN LKGSRP+L+F   FD+  H+ LLKE++IQIF T + H  S+P+ DHVF F+I+D+ IWF N+QI     E D           L+E+GPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQ
        F LN IKIF GSFGGPTLYENP Y SPN  R +++
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQ

Q8UVY2 Ribosome biogenesis protein BRX1 homolog7.0e-3554.41Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        + ELK++GN LKGSRPIL+F   FD++  + LLKE++ QIFGT + H  S+P+ DH+F FSI D+ IWF NYQI     E D           L+E+GPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQL
        F LN IKIF GSFGGPTLYENP Y SPN  R +++L
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLIVQL

Q9C928 Ribosome biogenesis protein BRX1 homolog 21.1e-6786.47Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEE+KLTGNHLKGSRP+LTFSSNFDKD HWKLLKEM+ Q+FG  KEHR SKPYHDHVFVFSIVD+HIWF NYQISV HNESDK+A+GGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIF GSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

Q9LE16 Ribosome biogenesis protein BRX1 homolog 15.0e-6584.96Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRP+LTFSSNF+ D HWKLLKEM+ QIFG  + HR SKPYHDHVFVFSIVDDHIWF NYQISV HNESDK+ARG LDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGG TLYENP YVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

Arabidopsis top hitse value%identityAlignment
AT1G52930.1 Ribosomal RNA processing Brix domain protein7.6e-6986.47Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEE+KLTGNHLKGSRP+LTFSSNFDKD HWKLLKEM+ Q+FG  KEHR SKPYHDHVFVFSIVD+HIWF NYQISV HNESDK+A+GGLDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIF GSFGGPTLYENPLYVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI

AT3G15460.1 Ribosomal RNA processing Brix domain protein3.5e-6684.96Show/hide
Query:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR
        MEELKLTGNHLKGSRP+LTFSSNF+ D HWKLLKEM+ QIFG  + HR SKPYHDHVFVFSIVDDHIWF NYQISV HNESDK+ARG LDKMTLIEVGPR
Subjt:  MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPR

Query:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI
        FCLNPIKIFGGSFGG TLYENP YVSPNQ+R +
Subjt:  FCLNPIKIFGGSFGGPTLYENPLYVSPNQVRLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCATTGGAAACTTCTGAAGGAAATGAT
TATTCAGATTTTTGGAACTCTTAAGGAGCATCGACATTCTAAACCGTACCATGATCATGTATTTGTTTTCTCTATTGTTGATGACCATATATGGTTCTGGAATTACCAGA
TATCTGTTTCACATAATGAATCAGATAAAGTCGCTCGAGGAGGACTTGATAAAATGACACTCATTGAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGT
GGCAGTTTTGGAGGTCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGGTTAGATTGATTGTCCAACTTTTTGATAATTTGGGATTACACTTCTTCACACT
ATTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCATTGGAAACTTCTGAAGGAAATGAT
TATTCAGATTTTTGGAACTCTTAAGGAGCATCGACATTCTAAACCGTACCATGATCATGTATTTGTTTTCTCTATTGTTGATGACCATATATGGTTCTGGAATTACCAGA
TATCTGTTTCACATAATGAATCAGATAAAGTCGCTCGAGGAGGACTTGATAAAATGACACTCATTGAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGT
GGCAGTTTTGGAGGTCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGGTTAGATTGATTGTCCAACTTTTTGATAATTTGGGATTACACTTCTTCACACT
ATTCTTTTAA
Protein sequenceShow/hide protein sequence
MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTLKEHRHSKPYHDHVFVFSIVDDHIWFWNYQISVSHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFG
GSFGGPTLYENPLYVSPNQVRLIVQLFDNLGLHFFTLFF