CuGenDBv2

Gene ID	CsGy5G013765
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	coiled-coil domain-containing protein 1 isoform X3
Genome location	Gy14Chr5:18341068..18343152
RNA-Seq Expression	CsGy5G013765
Synteny	CsGy5G013765
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066134.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

3.64e-102

87.5

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSIL DDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

3.12e-103

88.02

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

XP_004150191.1 uncharacterized protein LOC101219995 [Cucumis sativus]

2.09e-117

100

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA

Query:  ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
Subjt:  ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

XP_016903615.1 PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]

3.64e-102

86.98

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DR+KERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

XP_022993807.1 glucosidase 2 subunit beta [Cucurbita maxima]

1.96e-84

78.87

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQ
        MD RK  G GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP        PR+S PH QSDSS +PPP IENLVVDGESQ
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQ

Query:  SILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSDEDVDDRIKERRKKK
        SILGDDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE+      EEF SSDED+DDR KERRKKK
Subjt:  SILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSDEDVDDRIKERRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

1.76e-102

86.98

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DR+KERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

1.76e-102

87.5

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSIL DDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.51e-103

88.02

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A6J1FGM0 nucleolin

2.54e-84

79.69

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP---------PRSSHPHIQSDSSFQPPPPIENLVVDGES
        MD RK    GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP         PR S PH QSDSS +PPP IENLVVDGES
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP---------PRSSHPHIQSDSSFQPPPPIENLVVDGES

Query:  QSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE---EEFTSSDEDVDDRIKERRKKK
        QSILGDDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE+   EEF SSDED+DDR KERRKKK
Subjt:  QSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE---EEFTSSDEDVDDRIKERRKKK

A0A6J1JTW4 glucosidase 2 subunit beta

9.51e-85

78.87

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQ
        MD RK  G GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP        PR+S PH QSDSS +PPP IENLVVDGESQ
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQ

Query:  SILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSDEDVDDRIKERRKKK
        SILGDDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE+      EEF SSDED+DDR KERRKKK
Subjt:  SILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSDEDVDDRIKERRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

5.9e-23

45.18

Show/hide

Query:  RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKA
        R    E++++EQLLQAAQD+++LKLS+DSH SR S +YLD DL  RF AL+S+  +      +     QP    +++V +        +DL  RFAALK 
Subjt:  RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKA

Query:  SLP----SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD
        SLP    SS+  L   I  D D   E+ EV+KLIQWA DAARLDPSP S+  DE+ +   SD++ D
Subjt:  SLP----SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD

Sequences

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CDS sequence

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ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTC
TCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATT
CCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTG
CCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACT
CGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGA

mRNA sequence

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AATCGACGAAAAAGAAAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTC
AAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCC
GCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTG
CTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCT
AAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAA
AAAGAAGGGCGGATGAGCGTTGATTGAAACTGCTATCTGTTTGTGCATTATTGGATTCACTGATTTTGTGGCATTTAGAAACTGGAGATTCGCAGATTGGATAGATACAA
TCCGGATTTTGGTTGAACTAGATCGTGATTCATGTTGAAGATCTTATGTACACAGGCAATGGGCTTCAACTCCTTTTTGGTTCAACTGCTTCTCTTGAGCAACGATTTGT
TTCAGATGGTTGATCTTCTTCAACCACATGGACTTCCTCTACATTAGAAAACATGACTTCAGAGTAAGACACGTGCCTATGGTTTCTTCATATTCTCCAGTCTACAGAAG
TGATTTAAAACAAATATTTGTATGAAAGTTTGAAAGAAATGCCAGTTTTTCACAAAATATAGACTACAACAGCCTTGAATCAAACCAAAAGATAAGAAGGTAAGAGCAAG
ATCATGTATCATGTATCATGTATCATGTATCATGTATCAT

Protein sequence

Show/hide protein sequence

MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL
PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

CsGy5G013765 (gene) of Cucumber (Gy14) v2.1 genome