CuGenDBv2

Gene ID	CsGy5G014117
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Genome location	Gy14Chr5:19282255..19282668
RNA-Seq Expression	CsGy5G014117
Synteny	CsGy5G014117
Gene Ontology terms	GO:0009791 - post-embryonic development (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031947.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]

9.56e-70

85.4

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAH ID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N+VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

KAA0065439.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]

2.89e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

TYK01905.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]

7.40e-71

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N+VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

TYK16769.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]

2.49e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

TYK26605.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]

2.49e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRD2 Zinc finger BED domain-containing protein RICESLEEPER 2-like

4.63e-70

85.4

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAH ID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N+VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

A0A5D3BRU1 Zinc finger BED domain-containing protein RICESLEEPER 2-like

3.58e-71

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N+VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

A0A5D3C9B8 Zinc finger BED domain-containing protein RICESLEEPER 2-like

1.40e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

A0A5D3D2K8 Zinc finger BED domain-containing protein RICESLEEPER 2-like

1.21e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

A0A5D3DTE1 Zinc finger BED domain-containing protein RICESLEEPER 2-like

1.21e-70

86.13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        MVLTAHFID DWVLHK ILNF QV NHK +TIGKLIESCLLEW IDKVFSI VDNASSN+GAISYI KRLRSWKTLILE ELLHMR CAH+INLIVNEGL
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +EMHDSIA V N VRYVRSS KRL KFKTCVEQEKID
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

SwissProt top hits

e value

%identity

Alignment

B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 1

5.0e-11

27.74

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Query:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDN-ASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEG
        L   FID +W +H+ +LNF  V++ H ++ + + I + L +W + DK+F+I +DN  SS++   + ++  L +   L+L+ +L  +R  AHI+N +  + 
Subjt:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDN-ASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEG

Query:  LREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI
        +  +H  I  +   ++++++S     KF     Q +I
Subjt:  LREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI

P03010 Putative AC9 transposase

9.1e-13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVT-NHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSW-KTLILEDELLHMRSCAHIINLIVN
        M +T H+ID DW L K I+ F  V   H    + +   + +++W I+ K+F++++DNAS+NE A+  I + L+     L+ +    H+R   HI+NL+  
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVT-NHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSW-KTLILEDELLHMRSCAHIINLIVN

Query:  EGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +GL  +  +I ++  +V  V+SS  +  +   C  +  +D
Subjt:  EGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

P08770 Putative AC transposase

9.1e-13

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Query:  MVLTAHFIDLDWVLHKMILNFSQVT-NHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSW-KTLILEDELLHMRSCAHIINLIVN
        M +T H+ID DW L K I+ F  V   H    + +   + +++W I+ K+F++++DNAS+NE A+  I + L+     L+ +    H+R   HI+NL+  
Subjt:  MVLTAHFIDLDWVLHKMILNFSQVT-NHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSW-KTLILEDELLHMRSCAHIINLIVN

Query:  EGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID
        +GL  +  +I ++  +V  V+SS  +  +   C  +  +D
Subjt:  EGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKID

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 2

5.9e-12

28.47

Show/hide

Query:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDN-ASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEG
        L   FID +W +H+ +LNF  V++ H ++ + + I + L +W + DK+F+I +DN  SS++   + ++  L +   L+L+ +L  +R  AHI+N +  + 
Subjt:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDN-ASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEG

Query:  LREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI
        +  +H  I  +   ++++++S  R  KF     Q +I
Subjt:  LREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 3

5.5e-10

25.53

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Query:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDNASSNE-----GAISYIKKRLRSWKTLILEDELLHMRSCAHIINLI
        L A FID +W +H+ ++NF  V++ H ++++ + I + L +W + DK+F+I +DN  S+        I+Y+  +      ++++ +L  +R  AHI+N +
Subjt:  LTAHFIDLDWVLHKMILNFSQVTN-HKDDTIGKLIESCLLEWRI-DKVFSINVDNASSNE-----GAISYIKKRLRSWKTLILEDELLHMRSCAHIINLI

Query:  VNEGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI
          + +  +H  I  +   ++++++S     KF     Q +I
Subjt:  VNEGLREMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI

Arabidopsis top hits

e value

%identity

Alignment

AT3G42170.1 BED zinc finger ;hAT family dimerisation domain

6.9e-08

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Query:  LTAHFIDLDWVLHKMILN-FSQVTNHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL
        +TAH+ID DW + K +LN   +     D+ +   + +C+ EW ++ K+F++  ++ +SN  A+  I+ +L      IL+ +L+     A     +  + L
Subjt:  LTAHFIDLDWVLHKMILN-FSQVTNHKDDTIGKLIESCLLEWRID-KVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGL

Query:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI
         +  D I  + + V++V++S     +F    EQ ++
Subjt:  REMHDSIARVCNLVRYVRSSLKRLTKFKTCVEQEKI

Sequences

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CDS sequence

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ATGGTACTCACTGCACACTTCATTGATTTAGATTGGGTTTTGCATAAAATGATTTTAAACTTTTCTCAAGTTACTAACCACAAGGATGATACTATTGGAAAGCTTATTGA
GAGTTGTTTATTGGAATGGAGGATTGATAAAGTCTTTTCTATAAATGTTGATAATGCAAGTTCGAATGAAGGAGCAATTTCGTATATTAAGAAAAGACTTAGAAGTTGGA
AAACCTTAATCTTGGAAGATGAACTGTTACACATGAGGAGTTGTGCCCACATAATTAATTTGATTGTAAATGAAGGATTGAGAGAAATGCATGATTCCATTGCTCGTGTT
TGTAATCTTGTACGTTACGTTAGATCATCCCTTAAAAGATTGACAAAGTTTAAAACTTGTGTGGAGCAAGAGAAAATTGATTGA

mRNA sequence

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Protein sequence

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MVLTAHFIDLDWVLHKMILNFSQVTNHKDDTIGKLIESCLLEWRIDKVFSINVDNASSNEGAISYIKKRLRSWKTLILEDELLHMRSCAHIINLIVNEGLREMHDSIARV
CNLVRYVRSSLKRLTKFKTCVEQEKID

CsGy5G014117 (gene) of Cucumber (Gy14) v2.1 genome