CuGenDBv2

Gene ID	CsGy5G014125
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Genome location	Gy14Chr5:19289804..19290143
RNA-Seq Expression	CsGy5G014125
Synteny	CsGy5G014125
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0004518 - nuclease activity (molecular function) GO:0034061 - DNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036024.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.23e-09

59.18

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+++FI LKHPF+AKQ A V+  RV+ KHGIPKS++   DKIFL  F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

KAA0049562.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

2.66e-09

57.14

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Query:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF
        +SK +HFI+LKHPF+AKQ A+  V  ++SKHGIP S++   DK+FLS F
Subjt:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF

KAA0067576.1 disease resistance protein [Cucumis melo var. makuwa]

1.89e-09

59.18

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+++FI L+HPF+AKQ A V+  RV+ KHGIPKS++   DKIFLS+F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]

1.94e-10

63.27

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+S+F+ LKHP+TAKQ A ++  +VVSKHGIPKS+I   DKIFLS+F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]

9.26e-10

59.18

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+S+FI ++HPF A+Q A+V+  RVVS+HGIPKS+I   DKIF+S+F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXG0 Transposon Ty3-G Gag-Pol polyprotein

1.57e-09

59.18

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+++FI LKHPF+AKQ A V+  RV+ KHGIPKS++   DKIFL  F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

A0A5A7TH70 DNA polymerase epsilon catalytic subunit

1.57e-09

57.14

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Query:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF
        +SK +HFI+LKHPF+AKQ A+  V  ++SKHGIP S++   DK+FLS F
Subjt:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF

A0A5A7U1C1 Retrotransposable element Tf2

1.29e-09

57.14

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Query:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF
        +SK +HFI+LKHPF+AKQ A+  V  ++SKHGIP S++   DK+FLS F
Subjt:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF

A0A5A7VM42 Disease resistance protein

9.16e-10

59.18

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Query:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF
        +SK+++FI L+HPF+AKQ A V+  RV+ KHGIPKS++   DKIFLS+F
Subjt:  MSKFSHFIVLKHPFTAKQGADVY--RVVSKHGIPKSVIFYCDKIFLSSF

A0A5D3C142 Retrotransposable element Tf2

1.57e-09

57.14

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Query:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF
        +SK +HFI+LKHPF+AKQ A+  V  ++SKHGIP S++   DK+FLS F
Subjt:  MSKFSHFIVLKHPFTAKQGAD--VYRVVSKHGIPKSVIFYCDKIFLSSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTAAATTCAGCCATTTTATTGTCCTTAAACATCCATTCACAGCCAAGCAAGGTGCGGATGTCTATAGGGTGGTAAGTAAGCATGGGATCCCAAAGTCTGTAATCTT
CTATTGTGACAAAATTTTCTTAAGCAGTTTTTAG

mRNA sequence

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TTCATAGAAGGGTTACCCAAATGGGGAGGTTATGATTCCACTATGGTGGTGGTAGACTGAATGAGTAAATTCAGCCATTTTATTGTCCTTAAACATCCATTCACAGCCAA
GCAAGGTGCGGATGTCTATAGGGTGGTAAGTAAGCATGGGATCCCAAAGTCTGTAATCTTCTATTGTGACAAAATTTTCTTAAGCAGTTTTTAGAAGGAATTATTTTCAG
CAATGGGTACTTTGTTAAAAAGGAGCACAGCATATCATCCACAAACCGACAGCCAAACAGAGAGGGTGAATCGATGCTTGGAAACGTACTTAAGGTGTTTTTGCAATGAG
CAACCGACGA

Protein sequence

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MSKFSHFIVLKHPFTAKQGADVYRVVSKHGIPKSVIFYCDKIFLSSF

CsGy5G014125 (gene) of Cucumber (Gy14) v2.1 genome