; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G014900 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G014900
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L16, chloroplastic
Genome locationGy14Chr5:20629654..20630013
RNA-Seq ExpressionCsGy5G014900
SyntenyCsGy5G014900
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]3.22e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

ASY96370.1 ribosomal protein L16 [Cucumis melo subsp. agrestis]2.02e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

BAH95844.1 ribosomal protein L16, partial [Asparagus officinalis]1.13e-79100Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
        KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA

Query:  ISIAASKMPIRTQFITSG
        ISIAASKMPIRTQFITSG
Subjt:  ISIAASKMPIRTQFITSG

QHB76001.1 ribosomal protein L16 [Cucumis melo subsp. melo]8.25e-8099.16Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]3.44e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

TrEMBL top hitse value%identityAlignment
A0A249RY39 50S ribosomal protein L16, chloroplastic9.80e-81100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A249RYN9 50S ribosomal protein L16, chloroplastic9.80e-81100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A249S030 50S ribosomal protein L16, chloroplastic9.80e-81100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A286NFT8 50S ribosomal protein L16, chloroplastic9.80e-81100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A286SBA5 50S ribosomal protein L16, chloroplastic9.80e-81100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic3.5e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGI++RGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q09ME0 50S ribosomal protein L16, chloroplastic5.4e-6296.64Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q0ZIY1 50S ribosomal protein L16, chloroplastic3.5e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q2L940 50S ribosomal protein L16, chloroplastic2.7e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPI+TQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q4VZN1 50S ribosomal protein L16, chloroplastic5.8e-64100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 124.1e-4170.09Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+A
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA

Query:  ISIAASKMPIRTQFITS
        ISIAASK+P +T+FI S
Subjt:  ISIAASKMPIRTQFITS

ATCG00790.1 ribosomal protein L168.3e-5888.98Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        +KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITS
        AISIAASKMPI+TQFI S
Subjt:  AISIAASKMPIRTQFITS

ATMG00080.1 ribosomal protein L167.3e-2243.09Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV
        +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV

Query:  AENIARKAISIAASKMPIRTQFI
        +   AR+A ++AA K    T+F+
Subjt:  AENIARKAISIAASKMPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCT
ATACGAACCCAATTCATTACTTCGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCT
ATACGAACCCAATTCATTACTTCGGGATAG
Protein sequenceShow/hide protein sequence
MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMP
IRTQFITSG