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CsGy5G014927 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G014927
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotransposon protein
Genome locationGy14Chr5:20642038..20642352
RNA-Seq ExpressionCsGy5G014927
SyntenyCsGy5G014927
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]1.48e-5278.76Show/hide
Query:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKC
        MASTNSKATKHRWTTI            EEGGWRA NGTFK GYLVQVQKLMKEKI GSNIQVTPNL+ RVKILKKQY AI EMMGP+CS FGWNE+RKC
Subjt:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKC

Query:  IEAEKFVFDDLVK
        IEAEK VFDD VK
Subjt:  IEAEKFVFDDLVK

KGN51053.1 hypothetical protein Csa_009100 [Cucumis sativus]1.64e-72100Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV

Query:  KVRQ
        KVRQ
Subjt:  KVRQ

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]4.20e-5277.19Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGP+CSRFGWNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK

Query:  CIEAEKFVFDDLVK
        CIEAEK VFDD VK
Subjt:  CIEAEKFVFDDLVK

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.06e-5177.19Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGP+CSRFGWNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK

Query:  CIEAEKFVFDDLVK
        CIEAEK VFDD VK
Subjt:  CIEAEKFVFDDLVK

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]1.41e-68100Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0KNB4 Uncharacterized protein7.96e-73100Show/hide
Query:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
        MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV
Subjt:  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLV

Query:  KVRQ
        KVRQ
Subjt:  KVRQ

A0A1S3C252 uncharacterized protein At2g29880-like5.13e-5277.19Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGP+CSRFGWNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK

Query:  CIEAEKFVFDDLVK
        CIEAEK VFDD VK
Subjt:  CIEAEKFVFDDLVK

A0A5A7TF70 Putative nuclease HARBI12.58e-4672.48Show/hide
Query:  KATKHRWTTIE-------------EGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEK
        +A KH+WTTIE             EGGWR  NGTFK GYLVQVQKLMKEKIP SNIQVTPNLE RVKILKKQYT I +MMGP+C+ FGWNE+RKCIEAEK
Subjt:  KATKHRWTTIE-------------EGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEK

Query:  FVFDDLVKV
         VFDD VKV
Subjt:  FVFDDLVKV

A0A5A7U7F7 Retrotransposon protein7.16e-5378.76Show/hide
Query:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKC
        MASTNSKATKHRWTTI            EEGGWRA NGTFK GYLVQVQKLMKEKI GSNIQVTPNL+ RVKILKKQY AI EMMGP+CS FGWNE+RKC
Subjt:  MASTNSKATKHRWTTI------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKC

Query:  IEAEKFVFDDLVK
        IEAEK VFDD VK
Subjt:  IEAEKFVFDDLVK

A0A5D3BC95 Retrotransposon protein2.04e-5277.19Show/hide
Query:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK
        MASTNSKATKHRWTTI             EEGGWRA N TFKP YLVQVQKLMKEKIP SNIQVT NLE RVK LKKQYTAI +MMGP+CSRFGWNE+RK
Subjt:  MASTNSKATKHRWTTI-------------EEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRK

Query:  CIEAEKFVFDDLVK
        CIEAEK VFDD VK
Subjt:  CIEAEKFVFDDLVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGACAAATTCAAAAGCCACAAAGCATCGATGGACAACCATTGAAGAAGGTGGTTGGAGGGCTTACAATGGGACATTCAAACCAGGATATTTAGTACAAGTACA
AAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTAACTCCAAATCTAGAGCCGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAGATGATGG
GGCCATCGTGTAGTAGGTTTGGCTGGAATGAGAAACGAAAGTGCATTGAGGCAGAGAAATTTGTGTTCGATGACTTGGTTAAGGTAAGACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGACAAATTCAAAAGCCACAAAGCATCGATGGACAACCATTGAAGAAGGTGGTTGGAGGGCTTACAATGGGACATTCAAACCAGGATATTTAGTACAAGTACA
AAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTAACTCCAAATCTAGAGCCGAGAGTGAAAATTTTGAAGAAGCAGTACACTGCCATAGTAGAGATGATGG
GGCCATCGTGTAGTAGGTTTGGCTGGAATGAGAAACGAAAGTGCATTGAGGCAGAGAAATTTGTGTTCGATGACTTGGTTAAGGTAAGACAGTGA
Protein sequenceShow/hide protein sequence
MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKVRQ