; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G016430 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G016430
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRRM domain-containing protein
Genome locationGy14Chr5:22714812..22718817
RNA-Seq ExpressionCsGy5G016430
SyntenyCsGy5G016430
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040563.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa]3.15e-9686.31Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QSSS PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

KAE8648511.1 hypothetical protein Csa_008404 [Cucumis sativus]6.74e-11699.39Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG

XP_008465688.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo]9.26e-9385.71Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+Q SS PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

XP_011655304.2 uncharacterized protein LOC105435514 [Cucumis sativus]4.96e-7699.14Show/hide
Query:  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSS
        MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS 
Subjt:  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSS

Query:  SNPNSSRNVVEIAGYG
        SNPNSSRNVVEIAGYG
Subjt:  SNPNSSRNVVEIAGYG

XP_031741253.1 uncharacterized protein LOC101210443 [Cucumis sativus]4.51e-10999.38Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

TrEMBL top hitse value%identityAlignment
A0A0A0KQN3 Uncharacterized protein7.52e-10999.38Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

A0A0A0KS07 Uncharacterized protein7.67e-11598.77Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIAGYG
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG

A0A1S3CPG6 uncharacterized protein LOC1035033174.48e-9385.71Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+Q SS PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

A0A5D3C312 Uncharacterized protein5.20e-5179.41Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        M DSTPLHC FTTI PLLQH CHYNSS STKFRPPHLNL LIQ SGPMGFP FA+KRLGKG IALTEPSDSD+ FDEFFD       DED ILLPLKNT+
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EW
        EW
Subjt:  EW

A0A5D3C5E5 Glutamic acid-rich protein-like1.53e-9686.31Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QSSS PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1541.32Show/hide
Query:  GFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKL
        GF  FAV +   G   + E  D D   DE +      DEGE+  +DE +  LP+   K+W   +PRGFG GK Y+T IED LL E+EQ  +AQAAN+NKL
Subjt:  GFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKL

Query:  KDQSSSNPNSSRNVVEIAGYG
        K+    +    R+   + G G
Subjt:  KDQSSSNPNSSRNVVEIAGYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCAACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCT
CAACTTGCCTCTTATCCAGGCCTCTGGACCAATGGGCTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTG
GCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTT
GGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTTC
TTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGGTATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCAACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCT
CAACTTGCCTCTTATCCAGGCCTCTGGACCAATGGGCTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTG
GCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTT
GGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTTC
TTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGGTATGGATAG
Protein sequenceShow/hide protein sequence
MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGF
GEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG