CuGenDBv2

Gene ID	CsGy5G016560
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transcription initiation factor IIF subunit beta
Genome location	Gy14Chr5:22889048..22899206
RNA-Seq Expression	CsGy5G016560
Synteny	CsGy5G016560
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

5.63e-194

100

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]

1.07e-188

95.76

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNN+IVVGTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        SY+LNMSTDFIPMSVFSESSQ      GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+TKPR
Subjt:  VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

2.20e-191

97.83

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNN+IVVGTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+TKPR
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

XP_031741396.1 general transcription factor IIF subunit 2 isoform X2 [Cucumis sativus]

1.07e-181

81.47

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE---------------
        MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE---------------

Query:  ------------------------------------------------FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK
                                                        FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK
Subjt:  ------------------------------------------------FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK

Query:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQP
        PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQP
Subjt:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQP

Query:  EQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        EQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
Subjt:  EQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

2.74e-180

94.2

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDR +SRK Q NNNS VVGTDFLETNKADRAMWLLKCPQ+VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN LR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SYSLNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKP
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES E+ KP
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

1.06e-191

97.83

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNN+IVVGTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+TKPR
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

5.18e-189

95.76

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNN+IVVGTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        SY+LNMSTDFIPMSVFSESSQ      GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+TKPR
Subjt:  VSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

4.73e-177

91.73

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIV-VGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNAL
        MDVD K IDR +SRK QTNNNS+   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIV-VGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNAL

Query:  RSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
        ETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES ++TK R
Subjt:  ETKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

5.72e-173

89.89

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MD D K IDR +SRK  +N+ S   GTDFLETNKADRAMWLLKCPQ+VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        +YSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
         KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+E+ E+TKPR
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

1.41e-173

90.25

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MD D K IDR +SRK  +N+ S V GTDFLETNKADRAMWLLKCPQ+VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        +YSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR
         KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+E+ E+TKPR
Subjt:  TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

2.6e-14

27.38

Show/hide

Query:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +              V  L+       +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK
        Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEYR    + K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK

P41900 General transcription factor IIF subunit 2

2.3e-15

27.41

Show/hide

Query:  LETNKADRAMWLLKCPQLVTRALSNSP----------DAPSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFS-
        L+ + A R +WL+K P+ + +    +P          +      A+V +S+ P + + D ++   TE  ++++   +   L  +S    +D    S  S 
Subjt:  LETNKADRAMWLLKCPQLVTRALSNSP----------DAPSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFS-

Query:  -ESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
         +    K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  -ESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  KLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EYR    + K
Subjt:  KLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK

Q01750 General transcription factor IIF subunit 2

1.8e-15

27.78

Show/hide

Query:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEYR    + K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK

Q2T9L9 General transcription factor IIF subunit 2

2.3e-15

27.38

Show/hide

Query:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEYR    + K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK

Q8R0A0 General transcription factor IIF subunit 2

6.7e-15

27.38

Show/hide

Query:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +              V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEYR    + K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

1.9e-65

51.95

Show/hide

Query:  LETNKADRAMWLLKCPQLVTRALSN----------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP +V +A             S D+P   +AK++  VDPL+     D S  EF M +   + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQLVTRALSN----------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSES

Query:  SQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFK
        +QG    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+FK
Subjt:  SQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFK

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSED
        LFE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEY++S+ED
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSED

AT3G52270.1 Transcription initiation factor IIF, beta subunit

1.4e-76

57.54

Show/hide

Query:  LETNKADRAMWLLKCPQLVTRALSN--------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQ
        LET  A+R+M L+K P LV  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS DFIPM+VF ESS 
Subjt:  LETNKADRAMWLLKCPQLVTRALSN--------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQ

Query:  GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFER
        GK ++EGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++R E+E+++F LFER
Subjt:  GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFER

Query:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSED
        Q  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEY++++++
Subjt:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSED

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGTCGACGGCAAATCCATCGACCGTTCCACTTCCAGAAAACACCAAACCAATAACAACAGCATCGTTGTTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAG
AGCAATGTGGCTCTTGAAATGTCCCCAACTTGTTACTCGCGCCCTTTCTAATTCACCTGATGCCCCTTCCCGTCCTGTCGCTAAGGTCATCGTTTCTGTTGACCCACTTC
AATCCAATGACGACGATGATTCTTCCTCTACTGAGTTCACCATGGAATTGGCTAGCACCGACTCTGGAAATGCATTAAGGTCCTACTCATTGAATATGTCTACAGACTTC
ATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGAAGTTTACCATTGAAGGGAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTATGG
GAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTAT
TGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGGTCGGAGACAAAACGGTTGAGAAAGGAGCGTGGAGAATTGGAGAAGATTATTTTTAAGCTTTTTGAA
AGACAGCCATATTGGACGTCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTCA
CCAAGGAACGTATGAGCTGAAGCCAGAATACAGGGAATCAAGTGAGGACACGAAACCACGATAA

mRNA sequence

Show/hide mRNA sequence

GAGCGCATTCTTGCATTGCAATTCGTCTATATATATAATCCAAATCTTTGAAGTTGAACACATCCACGTTATTGTTGGTTACGGAAAAAAGCCTTTCTAACAAAAACCGT
TTTCTTTCTTTTCTTTTCAATTTTCCCACCTCCATTCCATTCATGTAACCATTTCTTCTTCTTCTTCTCTACAATGGACGTCGACGGCAAATCCATCGACCGTTCCACTT
CCAGAAAACACCAAACCAATAACAACAGCATCGTTGTTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAGAGCAATGTGGCTCTTGAAATGTCCCCAACTTGTTACT
CGCGCCCTTTCTAATTCACCTGATGCCCCTTCCCGTCCTGTCGCTAAGGTCATCGTTTCTGTTGACCCACTTCAATCCAATGACGACGATGATTCTTCCTCTACTGAGTT
CACCATGGAATTGGCTAGCACCGACTCTGGAAATGCATTAAGGTCCTACTCATTGAATATGTCTACAGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGA
AGTTTACCATTGAAGGGAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTATGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACC
AAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTATTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAG
CAAGGGGTCGGAGACAAAACGGTTGAGAAAGGAGCGTGGAGAATTGGAGAAGATTATTTTTAAGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATTCAAG
AGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTCACCAAGGAACGTATGAGCTGAAGCCAGAATACAGGGAA
TCAAGTGAGGACACGAAACCACGATAAGTGAGGAATGTTCCAAGAACTGGGAAATGGGTTTGGTTTTGGTATTTGACTGAAGCTTTGTGTGTGGAGGGAAGGGGGCTCTG
CTCTTTTCTTTGGTTTGAAGTGTAGGCTTAGGACTTCCCCGTTCTGGAGTCATCAGTAACCACTGAAATTTTGTAGAAATGCGAACCCATCGTTTCTTTTTTCGGGAGGG
GGTATATTATTGTACATAGTGATTACGGTTGTTTGGTGCTTTTAATCCTAATTTCTGTTTAAAGTTCTTTTGTAATTTGTAAGTATTGATTGAATGCGGTCTCTACTTAA
AGTTAAACTCATGGAATATCACATAAGATATACCTCAGGAAGGCTCTCTTGTTTCCAGCTTCATATGCGCATTTTCCATTTCATCTTCTTTACTGTTAAAAGTCTGGTTC
ATTATTTTTTCATTTGTTGGGAAAAAAACGAGTTAGATTGGGTAGATGGAATCATTTTGTAATTAGATTTATTTGTTTGTTTTTATAATAGATGGAATCATTTTGTAATT
AGATTTATTTGTTTGTTTTTTAAT

Protein sequence

Show/hide protein sequence

MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDF
IPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFE
RQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKPR

CsGy5G016560 (gene) of Cucumber (Gy14) v2.1 genome