CuGenDBv2

Gene ID	CsGy5G018060
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Chromo domain-containing protein isoform 1
Genome location	Gy14Chr5:24193603..24198080
RNA-Seq Expression	CsGy5G018060
Synteny	CsGy5G018060
Gene Ontology terms	GO:0010190 - cytochrome b6f complex assembly (biological process) GO:0009507 - chloroplast (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN51853.2 hypothetical protein Csa_008870 [Cucumis sativus]

8.09e-152

100

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Query:  EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV
        EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV
Subjt:  EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV

Query:  AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG
        AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG
Subjt:  AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG

Query:  QLGFGRVSFTGNSNLWPNSN
        QLGFGRVSFTGNSNLWPNSN
Subjt:  QLGFGRVSFTGNSNLWPNSN

XP_008458773.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo]

4.89e-111

98.15

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
        MQESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLV RRGECDGATAAETGG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG

Query:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
        CVGNEKGLPE+SPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
Subjt:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

XP_011655414.1 uncharacterized protein LOC105435525 [Cucumis sativus]

1.25e-113

100

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
        MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG

Query:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
        CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
Subjt:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

XP_023536558.1 uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]

1.58e-84

80.12

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+ARKKR   KL+ R+ ECDGA AA ETG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG

Query:  GCVGNEKGLPEVSPGSGEEDET---TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
             E+ LPE+ PGSGEE+E     GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  GCVGNEKGLPEVSPGSGEEDET---TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

XP_038891069.1 uncharacterized protein LOC120080480 [Benincasa hispida]

4.27e-105

91.98

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
        MQESPS+ TRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALAL+KLPWMVGRRCLQ+ARKKRKKRKL+ RRGECDGATAAETGG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG

Query:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
        C  +E+GLPE+SPGSGEE+ET GNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
Subjt:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KR58 Uncharacterized protein

1.37e-157

100

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Query:  EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV
        EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV
Subjt:  EALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCV

Query:  AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG
        AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG
Subjt:  AVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG

Query:  QLGFGRVSFTGNSNLWPNSN
        QLGFGRVSFTGNSNLWPNSN
Subjt:  QLGFGRVSFTGNSNLWPNSN

A0A1S3C8M3 uncharacterized protein LOC103498078

2.37e-111

98.15

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
        MQESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLV RRGECDGATAAETGG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG

Query:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
        CVGNEKGLPE+SPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
Subjt:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

A0A5A7T2E5 Uncharacterized protein

2.37e-111

98.15

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG
        MQESPS+ATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLV RRGECDGATAAETGG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGG

Query:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
        CVGNEKGLPE+SPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
Subjt:  CVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

A0A6J1HEE2 uncharacterized protein LOC111463206

6.47e-84

79.04

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+ARKKR   KL+ R+ ECDGA AA ET 
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG

Query:  GCVGNEKGLPEVSPGSGEEDET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
          +  E+GLPE+ PGS EE+E      GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  GCVGNEKGLPEVSPGSGEEDET----TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

A0A6J1JH40 uncharacterized protein LOC111486958

1.54e-83

77.33

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Query:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+ARKKR   KL+ R+ ECDGA AA ETG
Subjt:  MQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAA-ETG

Query:  GCVGNEKGLPEVSPGSGEEDET---------TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN
             E+GLPE+ PGS EE+E           GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  GCVGNEKGLPEVSPGSGEEDET---------TGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLWPNSN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G01516.1 unknown protein

4.1e-26

43.14

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Query:  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECD------GATAAETGGCVGNEKG-----------
        CSGK CRS  A  +ADCVA+CCCPC+VV+   LA VK+PWM+GR+C+ +    +K+ K + R            +    +GGC G   G           
Subjt:  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECD------GATAAETGGCVGNEKG-----------

Query:  -------LPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTG
                 E    S +E+E T   SAR EAER+WL+LYQ+G LGFGRVSFTG
Subjt:  -------LPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTG

AT5G14690.1 unknown protein

3.0e-29

37.91

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Query:  PIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLV--
        P +   R H   H   ++  +  RRRR       D + CS K CRS  A  +ADCVA+CCCPC++++ L L LVK+PWM+GRRCL    + +KKR+++  
Subjt:  PIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLV--

Query:  -CRRGECDG--------------ATAAE---------TGGCVG------------------NEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG
          RRG  +G               TA E          GGC G                   E+   E +     ED      SAR EAER+WL+LYQ+G
Subjt:  -CRRGECDG--------------ATAAE---------TGGCVG------------------NEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVG

Query:  QLGFGRVSFTG
         LGFGRVSFTG
Subjt:  QLGFGRVSFTG

Sequences

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CDS sequence

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ATGAGAAAGGCGGAAGCACTCCAGAGTGATCAAACTAAAAGCACTTCCTCAGATCATATTGCTCTACTACTACAACAATCGATCTATCCACAACCACGTCGTTTTTCCAG
GAATTTGGTTGCCACATTCTTCTTCTTCGGCCTTCCGATCAAGAAAAAACCACGCAGACACACAGAAATTCACAAAATGCAAGAAAGCCCATCACAAGCCACGCGGCGGC
GAAGATTCGCCGTGGACGACGGAGCCGATCTAATTGACTGCTCCGGCAAGCATTGCCGATCCTGCACCGCCGGGTTGGTGGCGGATTGCGTCGCCGTCTGCTGCTGCCCC
TGCTCGGTGGTCAGCTTCTTGGCTCTGGCTTTGGTCAAACTGCCGTGGATGGTCGGACGGCGGTGTCTGCAGCAGGCGAGGAAGAAGAGGAAGAAGAGGAAATTGGTTTG
CCGGAGAGGGGAATGCGACGGCGCTACGGCGGCGGAAACTGGTGGGTGTGTGGGAAATGAAAAGGGATTGCCGGAAGTTTCGCCGGGATCCGGCGAGGAAGATGAAACGA
CGGGGAATTTTAGTGCAAGATTTGAAGCAGAGAGGATTTGGTTGCAATTGTATCAAGTGGGTCAGTTGGGATTTGGAAGAGTTTCTTTCACTGGGAATTCAAACCTTTGG
CCTAATTCCAATTAA

mRNA sequence

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Protein sequence

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MRKAEALQSDQTKSTSSDHIALLLQQSIYPQPRRFSRNLVATFFFFGLPIKKKPRRHTEIHKMQESPSQATRRRRFAVDDGADLIDCSGKHCRSCTAGLVADCVAVCCCP
CSVVSFLALALVKLPWMVGRRCLQQARKKRKKRKLVCRRGECDGATAAETGGCVGNEKGLPEVSPGSGEEDETTGNFSARFEAERIWLQLYQVGQLGFGRVSFTGNSNLW
PNSN

CsGy5G018060 (gene) of Cucumber (Gy14) v2.1 genome