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CsGy5G018100 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G018100
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L2, chloroplastic
Genome locationGy14Chr5:24233886..24234194
RNA-Seq ExpressionCsGy5G018100
SyntenyCsGy5G018100
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR012340 - Nucleic acid-binding, OB-fold
IPR022666 - Ribosomal Proteins L2, RNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAN04584.1 ribosomal protein L2, partial [Columnea sp. Lindqvist & Albert 30]2.02e-3198.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

AAN04585.1 ribosomal protein L2, partial [Pinguicula grandiflora]2.02e-3198.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

ABR67197.1 ribosomal protein L2, partial [Tradescantia ohiensis]2.48e-3198.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

CAA9893425.1 unnamed protein product [Spirodela intermedia]3.04e-3198.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

KAB2064411.1 hypothetical protein ES319_A09G017300v1, partial [Gossypium barbadense]2.73e-3198.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

TrEMBL top hitse value%identityAlignment
A0A0A0KP49 Ribosomal protein L22.96e-6985.59Show/hide
Query:  MVRLSFDGIH---------RDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI
        MVRLSFDGIH         RDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYGR+VT+EYDPNRNAYICLIHYGDGEKRYILHP   IIGDTI
Subjt:  MVRLSFDGIH---------RDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI

Query:  VSGTEVPINTF
        +S TEVPINTF
Subjt:  VSGTEVPINTF

Q8HTR2 Ribosomal protein L2 (Fragment)9.79e-3298.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

Q8HTR4 Ribosomal protein L2 (Fragment)9.79e-3298.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

Q8HTR5 Ribosomal protein L2 (Fragment)9.79e-3298.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

Q8HTR6 Ribosomal protein L2 (Fragment)9.79e-3298.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

SwissProt top hitse value%identityAlignment
A4QJF6 50S ribosomal protein L2, chloroplastic3.5e-25100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI

A4QJP0 50S ribosomal protein L2, chloroplastic3.5e-25100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI

A9L9D7 50S ribosomal protein L2, chloroplastic2.0e-2598.11Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN

Q8S8U0 50S ribosomal protein L2-B, chloroplastic3.5e-25100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI

Q8S8V3 50S ribosomal protein L2-A, chloroplastic3.5e-25100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI

Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L22.5e-26100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI

ATCG01310.1 ribosomal protein L22.5e-26100Show/hide
Query:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
        DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Subjt:  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACGACTATCATTTGATGGGATCCACAGAGACCATGTCTTCATTTATAGGCTCCCAAGTACCTGGATCAATCAAAAGTTCGATTCTTATTGGAACTGTCCATATCC
AGTTCATCCTTTGGAACCATATCACATCCCAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATG
GTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAATACTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTACGACTATCATTTGATGGGATCCACAGAGACCATGTCTTCATTTATAGGCTCCCAAGTACCTGGATCAATCAAAAGTTCGATTCTTATTGGAACTGTCCATATCC
AGTTCATCCTTTGGAACCATATCACATCCCAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATG
GTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAATACTTTTTAG
Protein sequenceShow/hide protein sequence
MVRLSFDGIHRDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPINTF