; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G018213 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G018213
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotransposon protein
Genome locationGy14Chr5:24356601..24357337
RNA-Seq ExpressionCsGy5G018213
SyntenyCsGy5G018213
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026115.1 retrotransposon protein [Cucumis melo var. makuwa]1.45e-9364.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKN  +QR+F+RS ET SRH N+VL+ V+RL +ELL K Q VP++CT+ +W+CFEN LG LD TYIKVNV ASDR RYRTRK EVTTNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-9364.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]4.45e-9464.65Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL DELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-9364.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]3.88e-9564.65Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+CFEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

TrEMBL top hitse value%identityAlignment
A0A5A7SNV3 Retrotransposon protein7.04e-9464.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKN  +QR+F+RS ET SRH N+VL+ V+RL +ELL K Q VP++CT+ +W+CFEN LG LD TYIKVNV ASDR RYRTRK EVTTNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

A0A5A7TXW1 Retrotransposon protein2.15e-9464.65Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL DELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

A0A5A7U476 Retrotransposon protein8.68e-9464.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

A0A5A7VG29 Retrotransposon protein1.88e-9564.65Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+CFEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

A0A5D3BDX0 Retrotransposon protein8.68e-9464.19Show/hide
Query:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF
        M+  ELA+++NAF+  Q Q+++  +   ND +RI  +P +TRH+IRQ+AYFRMIH SDLVC+QSTRMDRRCFAILCHLL+T   L ST+ VDVEE+V +F
Subjt:  MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIF

Query:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR
        LH+L+HDVKNR +QR+F+RS ET SRHFN+VL+ V+RL +ELL K Q VP++CT+ +W+ FEN LG LD TYIKVNV ASDR RYRTRK EV TNVLGV 
Subjt:  LHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVR

Query:  DTKGNFVFFLSGWKG
        DTKG+FV+ L+GW+G
Subjt:  DTKGNFVFFLSGWKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein4.5e-1428.49Show/hide
Query:  FRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELL---AKSQ
        +R + +    C Q  RM   CF  LC++LQT   L+ T  + +EE V +FL +  H+   R+V   F R+ ET  R F  VL     L+ + +    + +
Subjt:  FRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELL---AKSQ

Query:  L--VPS--DCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG
        L  +P         W  F  F+G +D T++ V V    +  Y  R    + N++ + D K  F +  +G  G
Subjt:  L--VPS--DCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG

AT5G28730.1 unknown protein8.6e-0530Show/hide
Query:  IHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELL
        I+ +++ CQ   RM    F  LC +L     L+S+  + ++E V IFL + + +   R++   F  + ET  R F+ VL  + RL+ E +
Subjt:  IHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELL

AT5G28950.1 unknown protein1.7e-0534.55Show/hide
Query:  FENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG
        F++ +G +DDT+I   V     P +R RK +++ N+L   +    F++ LSGW+G
Subjt:  FENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)8.0e-1932.12Show/hide
Query:  FRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVP
        +++++  +  C ++ RMD+  F  LC LLQT  +L  T+ + +E  + IFL ++ H+++ R VQ  F  S ET SRHFN VL  V+ +S +    +    
Subjt:  FRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKNREVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVP

Query:  SDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG
        SD        F++ +GV+D  +I V V   ++  +R     +T NVL        F + L+GW+G
Subjt:  SDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCCACAGAACTGGCAAATGTTTTGAACGCCTTTCTACTTGTCCAACATCAAATGATAATGACGTTTGACACATTCTTCAATGATATGAGAAGGATTCCCCAAGT
ACCGTGTGACACAAGGCATAAGATTAGACAGATTGCGTATTTTCGTATGATACACAAGTCTGACCTTGTATGTCAGCAAAGTACGCGCATGGATAGACGTTGTTTCGCAA
TTCTCTGTCATCTCCTACAGACAACGACCGTACTAGAATCCACTGACGCTGTCGATGTCGAAGAGATAGTCACTATCTTCCTACACGTGCTTTCACATGATGTTAAGAAC
CGCGAGGTACAACGAGACTTTGTACGATCTAGCGAGACTGCATCAAGGCATTTTAACATAGTCCTTATGGTCGTACTGCGTCTGTCTGACGAGTTATTGGCGAAATCACA
GCTTGTTCCAAGCGACTGCACAAATCCCAAGTGGCAGTGTTTCGAGAATTTCCTTGGTGTCCTTGACGACACATACATAAAAGTGAACGTGTTCGCAAGTGATCGACCTA
GATATCGAACACGGAAGAGTGAAGTGACGACGAATGTTCTTGGCGTACGTGATACAAAAGGGAACTTCGTTTTCTTCTTATCAGGCTGGAAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCCACAGAACTGGCAAATGTTTTGAACGCCTTTCTACTTGTCCAACATCAAATGATAATGACGTTTGACACATTCTTCAATGATATGAGAAGGATTCCCCAAGT
ACCGTGTGACACAAGGCATAAGATTAGACAGATTGCGTATTTTCGTATGATACACAAGTCTGACCTTGTATGTCAGCAAAGTACGCGCATGGATAGACGTTGTTTCGCAA
TTCTCTGTCATCTCCTACAGACAACGACCGTACTAGAATCCACTGACGCTGTCGATGTCGAAGAGATAGTCACTATCTTCCTACACGTGCTTTCACATGATGTTAAGAAC
CGCGAGGTACAACGAGACTTTGTACGATCTAGCGAGACTGCATCAAGGCATTTTAACATAGTCCTTATGGTCGTACTGCGTCTGTCTGACGAGTTATTGGCGAAATCACA
GCTTGTTCCAAGCGACTGCACAAATCCCAAGTGGCAGTGTTTCGAGAATTTCCTTGGTGTCCTTGACGACACATACATAAAAGTGAACGTGTTCGCAAGTGATCGACCTA
GATATCGAACACGGAAGAGTGAAGTGACGACGAATGTTCTTGGCGTACGTGATACAAAAGGGAACTTCGTTTTCTTCTTATCAGGCTGGAAAGGTTGA
Protein sequenceShow/hide protein sequence
MNPTELANVLNAFLLVQHQMIMTFDTFFNDMRRIPQVPCDTRHKIRQIAYFRMIHKSDLVCQQSTRMDRRCFAILCHLLQTTTVLESTDAVDVEEIVTIFLHVLSHDVKN
REVQRDFVRSSETASRHFNIVLMVVLRLSDELLAKSQLVPSDCTNPKWQCFENFLGVLDDTYIKVNVFASDRPRYRTRKSEVTTNVLGVRDTKGNFVFFLSGWKG