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CsGy5G018439 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G018439
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionBeta-galactosidase
Genome locationGy14Chr5:24821410..24821739
RNA-Seq ExpressionCsGy5G018439
SyntenyCsGy5G018439
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045054.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]3.11e-3560.95Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFL GLNPKFD V G ILGQRP+PS M++ FE+ LE +HT+AM +  T T D AAFSARSSN  SDK+NGK IPVCEHCKKQ   K+      VVP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

KAA0051025.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]8.06e-3659.81Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        IYDFL  LN KFDVV GRILGQRPIP  M++  ++ LE +HTSAMN    P  D   F+ RSS   S KHNGK IP+CEHCKK  IP+N +G+YMVVP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNATNK
        VRN++ +
Subjt:  VRNATNK

KAA0061964.1 reverse transcriptase [Cucumis melo var. makuwa]1.65e-3461.9Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFLVGLNPKFD V GRILGQRP+PS M++ FE+ LE + T+AM++ AT T D AAFSARS N  SDK+NGK IPVCEH KKQW  K+  G+  +VP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

TYK23966.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]2.13e-3660.95Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFLVGLNPKFD V GRILGQRP+PS M+  FE+ LE + T+AM++  T T D AAFSARS N  SDK+NGK IPVCEH KKQW  K+  G+  +VP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

XP_031741782.1 uncharacterized protein LOC116403961 [Cucumis sativus]2.97e-5280.18Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        IYDFL GLNPKFDVVRGRILGQRPIPS M++  EI LE + TSAM ISATPT D AAFSARSSNSSSDKHNGK IPVC+HCKK  IPKNNVGSYMVVP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNA---TNKT
        VRNA   TN+T
Subjt:  VRNA---TNKT

TrEMBL top hitse value%identityAlignment
A0A5A7TPJ1 UBN2_3 domain-containing protein1.50e-3560.95Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFL GLNPKFD V G ILGQRP+PS M++ FE+ LE +HT+AM +  T T D AAFSARSSN  SDK+NGK IPVCEHCKKQ   K+      VVP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

A0A5A7UBM2 UBN2_3 domain-containing protein3.90e-3659.81Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        IYDFL  LN KFDVV GRILGQRPIP  M++  ++ LE +HTSAMN    P  D   F+ RSS   S KHNGK IP+CEHCKK  IP+N +G+YMVVP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNATNK
        VRN++ +
Subjt:  VRNATNK

A0A5A7V3T3 Reverse transcriptase7.97e-3561.9Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFLVGLNPKFD V GRILGQRP+PS M++ FE+ LE + T+AM++ AT T D AAFSARS N  SDK+NGK IPVCEH KKQW  K+  G+  +VP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

A0A5D3C5X4 Beta-galactosidase9.77e-3567.42Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKN
        +YDFLVGLNPKFD V GRILGQRP+PS M++ FE+ LE + T+AM +  TPT D AAFS RSSN  SDK+NGK IP+CEHCKKQW  K+
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKN

A0A5D3DK29 UBN2_3 domain-containing protein1.03e-3660.95Show/hide
Query:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE
        +YDFLVGLNPKFD V GRILGQRP+PS M+  FE+ LE + T+AM++  T T D AAFSARS N  SDK+NGK IPVCEH KKQW  K+  G+  +VP E
Subjt:  IYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHE

Query:  VRNAT
         +  T
Subjt:  VRNAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTATGACTTTCTTGTTGGTCTTAATCCTAAGTTTGATGTAGTTCGAGGGCGTATACTAGGCCAAAGACCTATTCCCTCTTCAATGAAAATTCGTTTTGAAATCCA
CCTCGAGGGAAATCATACAAGTGCTATGAATATTTCTGCAACCCCTACTACTGACTTCGCTGCTTTTAGTGCAAGATCTTCTAACAGTAGCAGTGACAAGCATAATGGAA
AACAAATTCCTGTCTGCGAGCATTGCAAAAAACAATGGATACCAAAAAACAATGTTGGAAGTTACATGGTCGTCCCCCATGAGGTAAGAAACGCGACAAACAAAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTATGACTTTCTTGTTGGTCTTAATCCTAAGTTTGATGTAGTTCGAGGGCGTATACTAGGCCAAAGACCTATTCCCTCTTCAATGAAAATTCGTTTTGAAATCCA
CCTCGAGGGAAATCATACAAGTGCTATGAATATTTCTGCAACCCCTACTACTGACTTCGCTGCTTTTAGTGCAAGATCTTCTAACAGTAGCAGTGACAAGCATAATGGAA
AACAAATTCCTGTCTGCGAGCATTGCAAAAAACAATGGATACCAAAAAACAATGTTGGAAGTTACATGGTCGTCCCCCATGAGGTAAGAAACGCGACAAACAAAACATAG
Protein sequenceShow/hide protein sequence
MIYDFLVGLNPKFDVVRGRILGQRPIPSSMKIRFEIHLEGNHTSAMNISATPTTDFAAFSARSSNSSSDKHNGKQIPVCEHCKKQWIPKNNVGSYMVVPHEVRNATNKT