CuGenDBv2

Gene ID	CsGy5G019740
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Photosystem II CP43 reaction center protein
Genome location	Gy14Chr5:26013148..26013450
RNA-Seq Expression	CsGy5G019740
Synteny	CsGy5G019740
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022904 - respiratory electron transport chain (biological process) GO:0050821 - protein stabilization (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0042301 - phosphate ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR001056 - Photosystem II reaction centre protein H IPR036001 - Photosystem antenna protein-like superfamily IPR036863 - Photosystem II reaction centre protein H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AFU94725.1 PsbC, partial [Trigonia sp. CCD-2012]

8.29e-31

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

KGN51555.1 hypothetical protein Csa_007903 [Cucumis sativus]

9.36e-68

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Query:  MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALGY
        MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGS+CILGGIWHILTKPFAWAR  LVWSGE+YLSYSLGALGY
Subjt:  MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALGY

WP_206639778.1 hypothetical protein, partial [Vibrio vulnificus]

7.73e-30

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

XP_007134691.1 hypothetical protein PHAVU_010G068100g, partial [Phaseolus vulgaris]

2.05e-30

79.71

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Query:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

XP_007144144.1 hypothetical protein PHAVU_007G132400g, partial [Phaseolus vulgaris]

1.02e-30

79.71

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Query:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPL5 Photosystem II CP43 chlorophyll apoprotein

4.53e-68

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Query:  MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALGY
        MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGS+CILGGIWHILTKPFAWAR  LVWSGE+YLSYSLGALGY
Subjt:  MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALGY

A0A5K1HIA5 Uncharacterized protein (Fragment)

4.17e-30

76.06

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRA VWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

K4K919 PsbC (Fragment)

4.02e-31

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

V7AN37 Uncharacterized protein (Fragment)

9.90e-31

79.71

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Query:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

V7BGZ1 Uncharacterized protein (Fragment)

4.92e-31

79.71

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Query:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  GDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

SwissProt top hits

e value

%identity

Alignment

A0A331 Photosystem II CP43 reaction center protein

2.6e-25

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

B5LMM0 Photosystem II CP43 reaction center protein

2.6e-25

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

Q09X21 Photosystem II CP43 reaction center protein

2.0e-25

78.87

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        V G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

Q2QD93 Photosystem II CP43 reaction center protein

2.0e-25

78.87

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

Q8S8X7 Photosystem II CP43 reaction center protein

2.6e-25

77.46

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

2.7e-25

74.65

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Query:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL
        + G LLK      G +    DLEDI+GGHVWLGSICI GGIWHILTKPFAWARRALVWSGEAYLSYSL AL
Subjt:  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGAL

ATCG00710.1 photosystem II reaction center protein H

3.3e-07

66.67

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Query:  SVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVG
        S RS PR T VG LLKPLNSEYGKVAPG+    ++G
Subjt:  SVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVG

Sequences

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CDS sequence

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ATGTACCAACACAAATATGCATATAATACGAAAGTAATTTTCAAGTGGATTGCCTCCGTTAGATCTAGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAA
TTCGGAATATGGTAAAGTGGCTCCTGGGTACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTA
AACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTAGGATATTAG

mRNA sequence

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Protein sequence

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MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALGY

CsGy5G019740 (gene) of Cucumber (Gy14) v2.1 genome