CuGenDBv2

Gene ID	CsGy5G021330
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	Gy14Chr5:27078749..27079690
RNA-Seq Expression	CsGy5G021330
Synteny	CsGy5G021330
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KGN52335.2 hypothetical protein Csa_009403 [Cucumis sativus]

3.16e-111

99.44

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS+
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

3.23e-115

100

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

6.42e-106

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Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

1.37e-93

87.85

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Query:  MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+TPL  LPSKP T+PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

8.44e-104

94.44

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLP-LPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP NKTPLLPSKP T+PISLP LP  TKPSLAGTAIAGAIFST SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLP-LPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

1.56e-115

100

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

3.11e-106

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Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

3.11e-106

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Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

1.33e-93

87.85

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Query:  MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

6.61e-94

87.85

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Query:  MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+TPL  LPSKP T+PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

2.9e-43

58.12

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS+LS  + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

2.7e-49

62.81

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Query:  MAATMA-TMAILNAKCFT-PINKTPLLPSKPATKPISL--------PLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NKT     KP +KPISL         LP+   P +   AIAGA+F+TL S D A A QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT-PINKTPLLPSKPATKPISL--------PLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA IVGLGL GL  SG L+ TPEA AA      GSD RG LLL+VV PAI WVLFNILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

2.1e-44

58.12

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Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS+LS  + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS

Sequences

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CDS sequence

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ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCC
TCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATC
TAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATG
CGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGG
ACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

mRNA sequence

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GAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCA
AAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACTATGGCT
ATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCT
CGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGG
CTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGG
TTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCC
GGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTGATTAGATGATCCTTAAATTACTTGTAATTT
TAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCTTTTTTAGTGTTTATAATCAATATTCACCAA
CCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATGCCACTTTCGTCCAG

Protein sequence

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MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRM
RTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE

CsGy5G021330 (gene) of Cucumber (Gy14) v2.1 genome