; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G022775 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G022775
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr5:28031765..28032300
RNA-Seq ExpressionCsGy5G022775
SyntenyCsGy5G022775
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034373.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.91e-1472Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MPL SLV WNVM DAY QCGLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

KAE8648735.1 hypothetical protein Csa_008921 [Cucumis sativus]2.89e-77100Show/hide
Query:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKLSWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYGCIKNKWKYNPLIC
        MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKLSWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYGCIKNKWKYNPLIC
Subjt:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKLSWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYGCIKNKWKYNPLIC

Query:  QGEPFQNS
        QGEPFQNS
Subjt:  QGEPFQNS

XP_008446291.1 PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo]2.99e-1472Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MPL SLV WNVM DAY QCGLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

XP_023537748.1 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]1.93e-1370Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MP  SLV WNVM DAY QCGLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

XP_038892628.1 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Benincasa hispida]1.41e-1372Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+SIAL V+E+MPL SLV WNVM DAY QCG FENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

TrEMBL top hitse value%identityAlignment
A0A0A0KTV7 DYW_deaminase domain-containing protein3.24e-1370Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MPL SLV WNVM DAY Q GLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

A0A1S3BE78 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial1.45e-1472Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MPL SLV WNVM DAY QCGLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

A0A5D3CYP1 Pentatricopeptide repeat-containing protein1.41e-1472Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MPL SLV WNVM DAY QCGLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

A0A6J1GYL5 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial1.54e-1266Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MP  SLV WNVM DAY QCGLF+NAL L
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

A0A6J1KA08 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial5.33e-1268Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N+LI   +SCGC+S+AL V+E+MP  SLV WNVM DAY Q GLFENALKL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

SwissProt top hitse value%identityAlignment
O22137 Pentatricopeptide repeat-containing protein At2g45350, chloroplastic5.5e-0540.38Show/hide
Query:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        +QN LIG    CGC+ ++  +++RMP    V +N M D Y +CGL  +A +L
Subjt:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

Q0WQW5 Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial4.2e-0544.23Show/hide
Query:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        + N LI    SCGC+ +A  V++ MP  SLV WN M DA  + G +++AL+L
Subjt:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

Q9SS60 Pentatricopeptide repeat-containing protein At3g035803.6e-0432.97Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL------SWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYG
        N L+   S  G ++ A  V++ MP+  LV WN +   Y   G +E AL++      SW++   F +     VLP  FG+  VV Q   L+G
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL------SWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYG

Arabidopsis top hitse value%identityAlignment
AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0644.23Show/hide
Query:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        + N LI    SCGC+ +A  V++ MP  SLV WN M DA  + G +++AL+L
Subjt:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

AT2G45350.1 Pentatricopeptide repeat (PPR) superfamily protein3.9e-0640.38Show/hide
Query:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        +QN LIG    CGC+ ++  +++RMP    V +N M D Y +CGL  +A +L
Subjt:  MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL

AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-0532.97Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL------SWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYG
        N L+   S  G ++ A  V++ MP+  LV WN +   Y   G +E AL++      SW++   F +     VLP  FG+  VV Q   L+G
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL------SWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYG

AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein8.1e-0440Show/hide
Query:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL
        N L+   + CG +  A  V++ MP   L  WNVM + Y + GL E A KL
Subjt:  NTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACACTCTGATCGGAGCCGATTCTTCTTGTGGGTGTGTGAGTATAGCATTGAATGTGTACGAGAGAATGCCTCTTACAAGTTTGGTATTGTGGAATGTGATGAG
TGATGCATATTTTCAGTGTGGGCTTTTCGAGAATGCTCTCAAACTATCATGGGTGATCGTAATAGGTTTCATCATATTAAGAATGGAATGTGTTCTTCCATGGACTTTTG
GTGATTTCTTTGTTGTAGATCAGTTAATAAAGTTATACGGTTGTATAAAAAATAAATGGAAGTATAATCCATTAATATGCCAAGGAGAACCTTTCCAAAATTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAACACTCTGATCGGAGCCGATTCTTCTTGTGGGTGTGTGAGTATAGCATTGAATGTGTACGAGAGAATGCCTCTTACAAGTTTGGTATTGTGGAATGTGATGAG
TGATGCATATTTTCAGTGTGGGCTTTTCGAGAATGCTCTCAAACTATCATGGGTGATCGTAATAGGTTTCATCATATTAAGAATGGAATGTGTTCTTCCATGGACTTTTG
GTGATTTCTTTGTTGTAGATCAGTTAATAAAGTTATACGGTTGTATAAAAAATAAATGGAAGTATAATCCATTAATATGCCAAGGAGAACCTTTCCAAAATTCATAG
Protein sequenceShow/hide protein sequence
MQNTLIGADSSCGCVSIALNVYERMPLTSLVLWNVMSDAYFQCGLFENALKLSWVIVIGFIILRMECVLPWTFGDFFVVDQLIKLYGCIKNKWKYNPLICQGEPFQNS