; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G022860 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G022860
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRRM domain-containing protein
Genome locationGy14Chr5:28082185..28083721
RNA-Seq ExpressionCsGy5G022860
SyntenyCsGy5G022860
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK15537.1 thaumatin-like protein 1 [Cucumis melo var. makuwa]8.82e-12297.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_008446301.1 PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]1.11e-12597.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_011655662.1 uncharacterized protein At1g27050 [Cucumis sativus]1.47e-130100Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]1.35e-11187.63Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  TS  KRRR  PP S   E+DD++KP+ KPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS IVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]4.80e-12192.27Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPS----TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPSSHLPTS  KRRRPPP     TE++D++KP+SKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPS----TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
TrEMBL top hitse value%identityAlignment
A0A0A0KTW9 RRM domain-containing protein7.10e-131100Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A1S3BE88 uncharacterized protein At1g270505.38e-12697.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A5A7STE1 Homeobox-leucine zipper protein ATHB-545.38e-12697.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A5D3CUC0 Thaumatin-like protein 14.27e-12297.37Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
        MGRKRDKPYPSSHLPTSA KRRRPPPST +DDLEKPVSKPAPPLALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALD

Query:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLAS IVNPRRSNSSSRSDVPFRGREVVAYDDIL
Subjt:  PSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
A0A6J1KFA1 uncharacterized protein At1g270506.54e-11287.63Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT
        MGRKRDKPYPS+H  TS  KRRR  PP S   E+DD++KP+ KPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMT

Query:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS IVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL
SwissProt top hitse value%identityAlignment
P0CJ66 Uncharacterized protein At1g270505.2e-5152.68Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRP--PPSTENDD-LEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P    KRRRP  P S+E+D+ ++KP++KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRP--PPSTENDD-LEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LASAIVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL
Arabidopsis top hitse value%identityAlignment
AT1G27050.1 homeobox protein 543.7e-5252.68Show/hide
Query:  MGRKRDKPYPSSHLPTSAPKRRRP--PPSTENDD-LEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA
        M RKRDKPY + H P    KRRRP  P S+E+D+ ++KP++KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+  
Subjt:  MGRKRDKPYPSSHLPTSAPKRRRP--PPSTENDD-LEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTA

Query:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSN----------SSSRSDVPFRGREVVA
        + +PSF  +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGRS++LASAIVNPR  N          SS  +    + R +V 
Subjt:  ALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSN----------SSSRSDVPFRGREVVA

Query:  YDDIL
        YDDI+
Subjt:  YDDIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCCCTAAGAGGCGTCGCCCTCCGCCGTCTACGGAGAACGATGATTTGGAAAAGCCCGT
GTCAAAACCTGCGCCACCCCTTGCCCTAGTCGTCGTTGACCTTCCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATTTCCCGCATCC
GAATCGACCGTGATTGTGTTGGTTACATCACTTATCGCACTAAAGACTCCGCCGATGCTGCCATGACCGCTGCGCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAA
AAGGTTCAGGTACTATGGGCTAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGT
GCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAGCCATTGTCAACCCCAGAAGAAGCAACAGTTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGGGAAGTTG
TTGCTTATGACGATATTCTCTAA
mRNA sequenceShow/hide mRNA sequence
AAGAAATTAGTGAGGAAGTTGTGAATGCATAAAAAAATTTCAAAATTAAAAATGTGTATGTTTCCTTTTCTTTTTCATGTTGTGAAAATTTTGTATACATTGGGGGCATA
AAGCATTATCTTTTTAGCGCCACCCATTCTCCGCCCCCGCTCCACCCACAAGCCATGGGTCGGAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCTGCCCC
TAAGAGGCGTCGCCCTCCGCCGTCTACGGAGAACGATGATTTGGAAAAGCCCGTGTCAAAACCTGCGCCACCCCTTGCCCTAGTCGTCGTTGACCTTCCTTCACACTGTT
CGGTCCTTGACTTGAAGTCCCGTTTTGAGATCTACGGATCCATTTCCCGCATCCGAATCGACCGTGATTGTGTTGGTTACATCACTTATCGCACTAAAGACTCCGCCGAT
GCTGCCATGACCGCTGCGCTTGATCCCTCCTTCGCCTTCACTATTGATTCCAAAAAGGTTCAGGTACTATGGGCTAATGATCCTCAAGTCCAATGGCGACAAGGGATTAA
CGTTGGTGTTAACAAGAATAAGGAATTATCTTCAAAGCTCTTGCGGGCAGAGGTGCCACTAAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAGCCATTGTCAACCCCA
GAAGAAGCAACAGTTCTTCAAGGTCAGATGTGCCTTTCAGGGGCAGGGAAGTTGTTGCTTATGACGATATTCTCTAAGTTCACAGATTGCTTCAATTGTTTTCTCCTTTT
CATTTAGTGTGGTATAGTGTAGTATAGATCGAGTTCTTAAGTGTACAAGTATTTTATGTCAGTTGTCTCATATTCCCCCATTAATTTTTCTTGATTCAAACTTCTTTATG
ATCCTAAATCCAAGTTTGTGTTAATGTATATCCACCATTAGTAGAAGGAAACTTAAGCTTTTCATCAAGGCTTAGTTGCTTACTTAATTACTCTGTTCTTCTAGTCATGC
TTTGATCTTTGCCCCTTGCTATATGAGCTTCTTCAAGAGTATAGAGCTTCCTCTAAGGAGACCATGTCTATGGTCGGATTGCGAGAAGTTGTTGTAGGTATGAGAACTTG
ACTAACATTATGTAAGAACTTCAAAGGAGTGCTCAAGTGTATGATTTTCATATACACTGTATAGTTTTTTATTAATGAATTGTGTTCTTGAACTTCCTTGGGACTAAGCA
GGAACTGTTTCTGGCTTCTTCTGGACAATTTTGTAACAAAATATAAAATTTCAATTTTTATGTA
Protein sequenceShow/hide protein sequence
MGRKRDKPYPSSHLPTSAPKRRRPPPSTENDDLEKPVSKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSK
KVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDVPFRGREVVAYDDIL