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CsGy5G025760 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G025760
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationGy14Chr5:29827822..29830381
RNA-Seq ExpressionCsGy5G025760
SyntenyCsGy5G025760
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]6.92e-5986.61Show/hide
Query:  RRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA
        RRR E  +IL+++YS M+  S AFKQL   DNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA
Subjt:  RRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA

Query:  VSISVAYLCGLI
        VSISVAYLCGLI
Subjt:  VSISVAYLCGLI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]2.45e-4572.65Show/hide
Query:  MGRRRRRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMK
        MGRR     +I +IL+++YS M+  S AFKQLF  DNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G   G NGAAGIHDQNCM+
Subjt:  MGRRRRRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMK

Query:  FIAAAVSISVAYLCGLI
         IAAAVSISVAYLCGLI
Subjt:  FIAAAVSISVAYLCGLI

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]1.27e-4373.91Show/hide
Query:  RRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFI
        RRRRR EI +IL+++YS MV S AFKQLF  D+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G   GG NGA GIHD+N MKFI
Subjt:  RRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFI

Query:  AAAVSISVAYLCGLI
        AAAVSISVAYLCGLI
Subjt:  AAAVSISVAYLCGLI

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]1.62e-0951.16Show/hide
Query:  RRRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG
        RRRRRR E+ +ILM+L+S MVAS AFKQLFT D ++ QESEH EK YG+   +         IP HI I    G G  G   GG+G
Subjt:  RRRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]1.99e-0741.04Show/hide
Query:  MILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRR-----YNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGA------------------
        +ILM+L S MVAS AFKQLFT D ++ QESEH EK YG+        I  R G   G     +     G GG G S GG+G                   
Subjt:  MILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRR-----YNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGA------------------

Query:  -AGIHD------QNCMKFIAAAVSISVAYLCGLI
          G H       QN M+FI A VS SVAYL  LI
Subjt:  -AGIHD------QNCMKFIAAAVSISVAYLCGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein3.35e-5986.61Show/hide
Query:  RRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA
        RRR E  +IL+++YS M+  S AFKQL   DNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA
Subjt:  RRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAA

Query:  VSISVAYLCGLI
        VSISVAYLCGLI
Subjt:  VSISVAYLCGLI

A0A0A0KWM3 Uncharacterized protein3.34e-4774.36Show/hide
Query:  MGRRRRRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMK
        MGRR     +I +IL+++YS M+  S AFKQLF  DNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G   G NGAAGIHDQNCMK
Subjt:  MGRRRRRRIEITMILMVLYSYMVA-SLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMK

Query:  FIAAAVSISVAYLCGLI
        FIAAAVSISVAYLCGLI
Subjt:  FIAAAVSISVAYLCGLI

A0A1S3BFU5 transformer-2 protein homolog alpha-like6.16e-4473.91Show/hide
Query:  RRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFI
        RRRRR EI +IL+++YS MV S AFKQLF  D+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G   GG NGA GIHD+N MKFI
Subjt:  RRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFI

Query:  AAAVSISVAYLCGLI
        AAAVSISVAYLCGLI
Subjt:  AAAVSISVAYLCGLI

A0A6J1J9S2 glycine-rich protein DOT1-like7.83e-1051.16Show/hide
Query:  RRRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG
        RRRRRR E+ +ILM+L+S MVAS AFKQLFT D ++ QESEH EK YG+   +         IP HI I    G G  G   GG+G
Subjt:  RRRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAAGAAGAAGAATAGAGATAACAATGATATTGATGGTACTTTATTCATATATGGTGGCTTCTCTTGCCTTCAAACAACTCTTCACAAAAGACAACAG
TAAGCACCAAGAAAGTGAGCATATGGAAAAGCAATATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAGATGGGATCCCAGAACATATAGCAATTACCCACA
GTGAAGGAAGAGGCGGCGTCGGGGTCAGCGTAGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTTATAGCTGCTGCAGTTTCCATATCAGTTGCA
TATTTGTGTGGACTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATTGCTTCCATTAATGAACAAATATAGATATAAGAAAGAAAAGAAAAATGGGAAGAAGAAGAAGAAGAAGAATAGAGATAACAATGATATTGATGGTACTTTATTCATAT
ATGGTGGCTTCTCTTGCCTTCAAACAACTCTTCACAAAAGACAACAGTAAGCACCAAGAAAGTGAGCATATGGAAAAGCAATATGGTAGAAGATACAATATAGAGGGTCG
ACATGGTTATACAGATGGGATCCCAGAACATATAGCAATTACCCACAGTGAAGGAAGAGGCGGCGTCGGGGTCAGCGTAGGAGGTAACGGTGCCGCAGGAATTCACGATC
AAAACTGCATGAAGTTTATAGCTGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGATTTGTGATATCAACAATAATGCATATCCAAAAACAATATATA
TATATATCAAATATTAGTGTGGAAATTAATAAGTTGTTCGATGTTTTTGATCAAAAGAATTATCACAGTAATGGGATGTTTTTGTTTGATTGAATATATATATGTAAAAT
TTGTGGTAAACTATAGTGATTAAGGAGTTGTTTGTTTTGCAATTTCAGAAGGGTTTTGTAAAAGTATGTGTTTAGATTATTGTACAGATTCAATCGATTTTAATGAACTT
ATATTTTGATGTAAAAAAGAGTGTATTAGTGTGACCATAAAGCCTGGATTGATCAAATCTAAAAAAGAGTGTATTAGTGTGACCATAAAGCCTGGATTGATCAAATCTCC
CTAAAAGTTGTGATACTAAGAAAAGAACGTCCTTATATTGTATTTTGATCCTGCGTTAAGTTGAATTTGCTCGAGTATGTTTTTGAATTCTATTTTTGTTATACAATATT
GTTAATAGTGGTGCATTTTGTTCGTTTGACTTTTCAATCTATATATATATTGTTC
Protein sequenceShow/hide protein sequence
MGRRRRRRIEITMILMVLYSYMVASLAFKQLFTKDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVA
YLCGLI