; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G025845 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G025845
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionR3H domain-containing protein 2-like
Genome locationGy14Chr5:29870237..29877910
RNA-Seq ExpressionCsGy5G025845
SyntenyCsGy5G025845
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR024771 - SUZ domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52193.1 hypothetical protein Csa_007878 [Cucumis sativus]4.97e-8086.36Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECRLP IRLADIPVNLPAEE+SS+KVAIKQRPQK SQLARD +ANSSK+  SKSVEERK+EYNKARA+IFNSSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVD DPRPQD+YRG LSAAKVEEKMIPGVPD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

XP_008446764.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo]1.37e-7987.66Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECR PAIRLADIPVNLP EE+SS+KVAIKQRPQK SQLARDASANSSKT  SKSVEERK+EYNKARA+IF+SSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVDADPRPQDSYRG LSAAKVEEKMIPG+PD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

XP_031741763.1 uncharacterized protein LOC116403955 [Cucumis sativus]3.13e-9997.42Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEE+SSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERK+EYNKA AQIFNSSSNSGC
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINRR
        HASEKVDADPRPQDSYRGCLSAAKVEEKMI GVPDINFSRGLIDCSTSSSRINRR
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINRR

XP_031742170.1 uncharacterized protein LOC116404096 [Cucumis sativus]3.80e-10098.06Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEE+SSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERK+EYNKARAQIFNSSSNSGC
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINRR
        HASEKVDADPRPQDSYRGCLSAAKVEEKMI GVPDINFSRGLIDCSTSSSRINRR
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINRR

XP_031742171.1 R3H domain-containing protein 2 [Cucumis sativus]8.15e-7986.36Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECRLP IRLADIPVNLPAEE+SS+KVAIKQRPQK SQLARD +ANSSK+  SKSVEERK+EYNKARA+IFNSSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVD DPRPQD+YRG LSAAKVEEKMIPGVPD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

TrEMBL top hitse value%identityAlignment
A0A0A0KRF5 SUZ domain-containing protein2.41e-8086.36Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECRLP IRLADIPVNLPAEE+SS+KVAIKQRPQK SQLARD +ANSSK+  SKSVEERK+EYNKARA+IFNSSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVD DPRPQD+YRG LSAAKVEEKMIPGVPD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

A0A1S3BGI0 R3H domain-containing protein 2-like6.64e-8087.66Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECR PAIRLADIPVNLP EE+SS+KVAIKQRPQK SQLARDASANSSKT  SKSVEERK+EYNKARA+IF+SSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVDADPRPQDSYRG LSAAKVEEKMIPG+PD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

A0A5D3CFX4 R3H domain-containing protein 2-like1.61e-7787.66Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECR PAIRLADIPVNLP EE+SS+KVAIKQRPQK SQLARDASANSSKT  SKSVEERK+EYNKARA+IF+SSSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVDADPRPQDSYRG LSAAKVEEKMIPG+PD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

A0A6J1GZL4 R3H domain-containing protein 2-like9.95e-7785.06Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECRLPAIRLADIPVNLP EE+S++KVAIKQRPQK SQ+A+DASANSSKT  SKSVEERK+EYNKARA+IFN SSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVDADPR QDSYRG L AAKVEEKMI GVPD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

A0A6J1IPS8 R3H domain-containing protein 2-like3.96e-7684.42Show/hide
Query:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC
        MVLLDNSLPDGSGSKIIV  TSECRLPAIRLADIPVNLP EE+S++KVAIKQRPQK SQ+A+DA ANSSKT  SKSVEERK+EYNKARA+IFN SSNSG 
Subjt:  MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGC

Query:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR
        HA  KVDADPR QDSYRG L AAKVEEKMI GVPD NFSRGLIDCSTSSSRI+R
Subjt:  HASEKVDADPRPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G40960.1 Single-stranded nucleic acid binding R3H protein3.2e-0943.16Show/hide
Query:  DGSGSKIIVCDTSECRLPAIRLADIPV-NLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHAS
        DG+ S+I+V  +S+ R PA RL++IPV      +   +KV IK RP K S +  D      K    KSVEERK++Y++ARA+IFN   N  C+ S
Subjt:  DGSGSKIIVCDTSECRLPAIRLADIPV-NLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHAS

AT3G10770.1 Single-stranded nucleic acid binding R3H protein2.9e-1041.84Show/hide
Query:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE-EHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHASEKV
        DGS ++I+V  T+E R P + L++IPV  P        K+AIK RP++ S      S +  +    +SVEERK+EY+KARA+IFNS S+S    S  +
Subjt:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE-EHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHASEKV

AT3G10770.2 Single-stranded nucleic acid binding R3H protein2.9e-1041.84Show/hide
Query:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE-EHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHASEKV
        DGS ++I+V  T+E R P + L++IPV  P        K+AIK RP++ S      S +  +    +SVEERK+EY+KARA+IFNS S+S    S  +
Subjt:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE-EHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHASEKV

AT3G56680.1 Single-stranded nucleic acid binding R3H protein2.4e-0943.3Show/hide
Query:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE--EHSSIKVAIKQRPQKWSQL-ARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHAS
        DG+ ++I+V  T+E + PA+RL++IPV   +E  +  S KV+IK RP K S   A D   N    R   SVEERK+EY+KAR +IF+  +   C  S
Subjt:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAE--EHSSIKVAIKQRPQKWSQL-ARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHAS

AT5G05100.1 Single-stranded nucleic acid binding R3H protein2.9e-1035Show/hide
Query:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEH---SSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCH-ASEK
        DGSG++I+   T E R P + L++IPV  P E H      K+AIK RP + +      S +  +    +SVEERK+EY+KARA+IFNS S+S    +S +
Subjt:  DGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEH---SSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCH-ASEK

Query:  VDADPRPQ-DSYRGCLSAAKVEEKMIPGVPDINFSRGLID
            P P+ DS       ++ E +++     +N++   +D
Subjt:  VDADPRPQ-DSYRGCLSAAKVEEKMIPGVPDINFSRGLID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTATTGGATAATAGTTTACCTGATGGGTCTGGTTCCAAAATTATCGTTTGCGATACTTCTGAATGTCGTCTTCCAGCTATCCGCCTTGCAGATATTCCTGTAAA
TCTACCAGCAGAGGAACATAGTAGCATAAAGGTTGCTATTAAACAGAGGCCACAGAAGTGGTCCCAACTAGCAAGAGATGCAAGTGCAAATTCATCAAAAACGAGGGATT
CCAAAAGTGTGGAAGAGAGGAAAAAGGAGTATAATAAAGCTCGTGCTCAAATATTTAACTCCAGCAGCAATTCAGGCTGTCATGCAAGTGAGAAAGTAGATGCTGATCCT
AGACCACAGGATAGTTATCGTGGTTGTTTGAGTGCTGCAAAGGTTGAGGAGAAGATGATTCCTGGAGTTCCTGATATAAATTTTAGTAGGGGTTTGATTGACTGTTCCAC
GAGTAGCAGTAGAATAAATAGAAGGTAG
mRNA sequenceShow/hide mRNA sequence
CCGTCGCCAATTTCTCTCTAGAATTTTCTTCTTCCGCCTCCGTGCACAGCGTCGAATCTCCAAACCCTAATTTATAAATGCAATTCCGATCCACAAATTCTTATGCTACC
TCGATCTCCTCTTTGGGAGCTTCTATTCCCTAATCTTTGATGTCTTGCTTCGTCTGCGGTTGAGGATCTCGGAGGACCGGAGTCACGGGAGGTCGCTGATTTGGATGAAG
CCATGAGTCGATTGATGCTCCCTTTTTCATCTCCTAAGAAGAATTCCAAATCCTTGGATGTGGCTGATGCTGCTCCTGCCTATCATTTTTCATCCGCTTGATTTCCTTCC
CTTTCTGGTTCAGCTTATTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCAGGTTGATCAGTTCCTTCGTGAGGCTTTGCATAACCCTCGGGAGCGTCTATCAAG
TAAGTTGTTTATTTAGCTTTCCTTTATTGTAGATGGTCAATGGTGTGATTGGTTTCAGGAGTTGTCTAATGTCATGTTCTGTAGAGGGAGGAGATAGTTAAAAGTTGCTA
GCTACGGCCTTCTCGAAGGTGGGCTGGAAGTGGCTGGTTGCTTCCCGGATTTGTATAGGCATTTAAATCAATGGTATTAGAAATTTAGAAGTATTATTGCCAAAAACTAC
ATGGTGGATTTCATGAAGATGTGATATATGTTTGGAACAGTATCGTGAAACTATGTGACATGATGTGCTTTTAGGTAATCCAAGACAAAGGTTGGATGGTTGTAAGACAA
TCTTGGGAAGATGTGTGGACTAGTGGAGGGTTTTTGGTTAACCGTTTTTCTAGTCGGTACAGGGTGGTGGATTCGAAGAATTAATTGCTGAAGGAGTTGTAGGACTTAAA
AGCTGGGTTGCAAAATGAATGCAAGACGAAATTTAGAAGATGGAGAAGAAAGGGAGATTTTGTTGCTATTGGATGTTCTGAATACTTAGAGCTAAATGATGAAAATAAAA
TAATTTACGAGCTAAACTTTTGCTGTGATTGGCGATGAATTCCGTCATGGGGGGAAGGCATGCAGTCTCTGATTATCATCCCCTTGGCCCTTAGGCTTTTTAAATGAGGC
TTTTTCCGTCTTAATAATATTTCTTGTTTCTCATCAAGAAGATAAATGGAGTTATATCTTTTCAGCCTACCAAGCAAAATTGTTTCTAAAAAAAAAACTATCACTATCTA
AAAGCATTAGGAATTAAATTTACTGTAGTCAAGAAGATGCTCAGTAACTGGAAAGCATTTTTTACCTGTTTTGACACTGAAGCTTCGTTAAACCAAAAGAAAAAGGAGAC
AACCTATTGGTAGAAAGGTCTTTACAATGATGTATTGATGCCTACAAAATTATTTTTTTTGTCTAACATGGTTCTGACTAGTACCATAACTTCAAGTGCTTAATTATTAT
CATGCACTTATTATATTGTTGAAAACATGGTGTTAATTATCTATTCCCTTCAACTGATATTTATTTATCATTGCTTTAGTTTTGCGCATGGAGCAAGATGTTGAAAAGTT
TATTCATGATCCTGCTTGACAGCAGCTGCCTACTTCATATTTACGGTTAGCTGCGCATCAGATTGTCCAACATTACTCGCTGCAATCCATGGTTCTATTGGATAATAGTT
TACCTGATGGGTCTGGTTCCAAAATTATCGTTTGCGATACTTCTGAATGTCGTCTTCCAGCTATCCGCCTTGCAGATATTCCTGTAAATCTACCAGCAGAGGAACATAGT
AGCATAAAGGTTGCTATTAAACAGAGGCCACAGAAGTGGTCCCAACTAGCAAGAGATGCAAGTGCAAATTCATCAAAAACGAGGGATTCCAAAAGTGTGGAAGAGAGGAA
AAAGGAGTATAATAAAGCTCGTGCTCAAATATTTAACTCCAGCAGCAATTCAGGCTGTCATGCAAGTGAGAAAGTAGATGCTGATCCTAGACCACAGGATAGTTATCGTG
GTTGTTTGAGTGCTGCAAAGGTTGAGGAGAAGATGATTCCTGGAGTTCCTGATATAAATTTTAGTAGGGGTTTGATTGACTGTTCCACGAGTAGCAGTAGAATAAATAGA
AGGTAGGACTGACAAGGAGCTGCCTAGTAGGCAGTACAAACCAAATAGTAGGGTAGCCATTCTTAGAGATCGTGAGATTGGCAGCAAGGACCCTGATTATGAGAGGAGTT
ATGATAGTTTTCCTTTGGACACTGAGAAAAGGCAAATGCAAATGGCAACTGCACGGTACACCTTACAGGACAGTTTTTGATGCTTTTGCAGAGAAAAGGCAAATGCAAAT
GAAGAGTACACACTGTCCTGGATGATACTTTGCAGGTAATTTGTATTAGTT
Protein sequenceShow/hide protein sequence
MVLLDNSLPDGSGSKIIVCDTSECRLPAIRLADIPVNLPAEEHSSIKVAIKQRPQKWSQLARDASANSSKTRDSKSVEERKKEYNKARAQIFNSSSNSGCHASEKVDADP
RPQDSYRGCLSAAKVEEKMIPGVPDINFSRGLIDCSTSSSRINRR