; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy5G027140 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy5G027140
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationGy14Chr5:30790778..30792756
RNA-Seq ExpressionCsGy5G027140
SyntenyCsGy5G027140
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAI52954.1 sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]8.73e-5265.07Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A
        M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ AS  SD N +  ASA+F D+Q++G++D++V GKVE     +
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A

Query:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
         V  + P D+LA L NLD ++  M +GFW DS TA++EMPGL+ALL
Subjt:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

KAE8648870.1 hypothetical protein Csa_007950 [Cucumis sativus]1.71e-88100Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMP
        PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMP
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMP

XP_004142385.1 uncharacterized protein LOC101217123 [Cucumis sativus]1.49e-92100Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

XP_016900221.1 PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]2.08e-7483.57Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM GLSALL
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]3.93e-5567.81Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A
        M VTGKK  KRSKKSA A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ AS  SD N +  ASA F+D+Q++G++D++V GKVE     +
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A

Query:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
         V  + PLD+LA LQN D ++AEM +GFW+DSSTA++ MPGLSALL
Subjt:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

TrEMBL top hitse value%identityAlignment
A0A0A0KTR9 VQ domain-containing protein7.22e-93100Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

A0A1S4DW56 sigma factor binding protein 1, chloroplastic-like1.01e-7483.57Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM GLSALL
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

A0A5A7SVU6 Sigma factor binding protein 11.01e-7483.57Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS
        M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASG SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVS

Query:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        P D+L FLQNLDGN+AEM NGFWHDSSTA++EM GLSALL
Subjt:  PLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like1.37e-3752.94Show/hide
Query:  MIVTGKKQAKR-SKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM--ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVG
        M +T KKQ+KR S+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+  A+  SD N      ++++F+D+Q++G++D+      +V 
Subjt:  MIVTGKKQAKR-SKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM--ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVG

Query:  GKVEAGV--GGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
        GK+E       V+P ++L  ++N D ++AEM   F HDSS+ ++EMPG SALL
Subjt:  GKVEAGV--GGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

D1MWZ4 Sigma factor binding protein 14.23e-5265.07Show/hide
Query:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A
        M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ AS  SD N +  ASA+F D+Q++G++D++V GKVE     +
Subjt:  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-ASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVE-----A

Query:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL
         V  + P D+LA L NLD ++  M +GFW DS TA++EMPGL+ALL
Subjt:  GVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.1e-0457.45Show/hide
Query:  KKQAKRSKK--SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +K  K+ KK  S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  KKQAKRSKK--SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.6e-0456.1Show/hide
Query:  KRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KR   +     KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  KRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 11.5e-0557.45Show/hide
Query:  KKQAKRSKK--SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +K  K+ KK  S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  KKQAKRSKK--SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCC
TCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGG
GCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTG
GCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTG
TAG
mRNA sequenceShow/hide mRNA sequence
GGGGTCCTTTTAAGGACATCTGGAAAGAAAGAAGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTC
CAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCT
TCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAAGGAGAAAATTCCCGATGATTGTAACAGGCAAAAAACAGGC
AAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAA
ACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCA
AGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAA
TTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCT
CCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGATGAAACCTTTCCCAGCCCTTTTTCTTTGTCCACATATAGTTCATATTGTTTTGAATA
TAATATATACGATCATTTTGAGAATTTATATCAATGTTCTTATGTGTGTGTTTGTTATCCACTGCACTCAGTTTATTATCAAAGGATGGTCACATGATCTCTAAC
CTGATCCTACTCTGTAGTTTATAATTATGTACGTCTCTTTTTAAATTTGTGAAAAAACTCAACTAAAATTTGGATTGTTAAAATCTGATACACATCTTGCTATCA
AAAGTTAATTAAATTTCATATATCTCCTATCAGACCCTGAAAATCTTCTAATCTTGTTTTTGGTAGATTCCTGAATTCTAAAGGATCTTAATCGAGGATTTATAT
GATACATAAAACTACAAATTTAGGTCCCATTTGATAACGTTAGTATTTGTGTTTTAAAGTTACGTTGGTTTTGTCGGTGGGTAGAATATTTTCGATCAAAATTTT
GAAGTTTCGTTGGCCTATGGTTATGAGTTCTTTGGATGCATTTTTTTTATTTTTCTTTTTCCTTTATGTATTCTTTTACCTCGCATTCACATTTACACACATTTT
TATAATATACGTATGATGTTATATTTTGTATAATCTATTATTAAAAATGATGAATTGTGGTGTATAAATAAGCGACGACCAAAGTTTCATTCAAGTAATTGTAAC
AATTTTCATAAAATTTATTGAAATTTCCATCGACGTCAATAATTCAAACCTTAATTTTTTCACCGTTTTTTACAATGATTTTTTAATTTTTCTTAGGGTATCAAC
ATGGTTGAAAAGTTAATAACGAAACAAATAAATTAATAGGTAGGAGTAGTGCTAACTATAGATGTCCAATTTAAGTTAATGGAGTTAAGCTTGCATGTAAGCGTT
TTGAGATAGTGCAAGGAAAGTGGCGGAAGGCAAAGGAATTAGACAACCCGTTGAGAGAAAATGCAACATGATACAAAAAAGATAACGAGAAAGGAAGACAACAAT
AGACCCTTAACCAATTATCATGTAACGAACTAGGCGGAGAGAAGCTTGATTAGTCATAAACATGTGTTAAGAATGCTACTAAACTAACACGTGTAACACACTAAG
TAGGGAGCAGTCAATACTAAAGGAAGTGTGATGCTTACTAACTTGGTTTAAGAGAGTATAAACATGTTAGATAAAGAGGAAGTTCTACC
Protein sequenceShow/hide protein sequence
MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDEL
AFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL