CuGenDBv2

Gene ID	CsGy6G003580
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ribosomal L18p/L5e family protein
Genome location	Gy14Chr6:3312207..3313867
RNA-Seq Expression	CsGy6G003580
Synteny	CsGy6G003580
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

6.87e-80

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGT
        VLPLFDSVQRSGVAVDGAEKLGT
Subjt:  VLPLFDSVQRSGVAVDGAEKLGT

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

5.03e-82

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSGVAVDGAEKLGTGSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

XP_016900104.1 PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]

3.98e-79

96.83

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]

6.46e-79

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGS
        VLPLFDSVQRSGVAVDGAEKLGTG+
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGS

XP_038884099.1 uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]

6.25e-79

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGS
        VLPLFDSVQRSGVAVDGAEKLGTG+
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

2.44e-82

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSGVAVDGAEKLGTGSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A1S4DVU4 uncharacterized protein LOC103488672

1.93e-79

96.83

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A5D3BWW4 Uncharacterized protein

1.93e-79

96.83

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A6J1EVG7 uncharacterized protein LOC111436340

8.47e-74

90.48

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A6J1JZ79 uncharacterized protein LOC111488745

8.82e-76

91.27

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

5.2e-42

68.29

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Query:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP
        +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRPI++RK VLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP

Query:  LFDSVQRSGVAVDGAEKLGTGSI
        LFDSV+R+G+ VDG E+L   S+
Subjt:  LFDSVQRSGVAVDGAEKLGTGSI

Sequences

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CDS sequence

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ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACC
GTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGC
TCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

mRNA sequence

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GTGTATCTCCAAAAAATTACACTAGGCTTATGGAAGCCAATCTTGAGAGATCATCAATGTATGTTTCAAACCTTATGGATTGGAGTGAGCTAACTCGAAATCCAGTCTGA
TCAATTGAGCATACAATTGACTAGAACCGAACCAAGTTCAGTTCAATACTAATATTTCTATAAATCAGTCCAACCCAAACCAAATCGAGTTGGTCGATCCATCAATTTGA
TTTTAGTTTTTTTCACCTCTAATAAATGTTACTTTACCATAAATTGCTATAGATTTATTGTCATGATAACTGAAAATTTGTGATTGATCAACATTTCAAAAGAAAATTGA
AGACACTTCGATGAACTTGAGGGATAAAATAGATTTTTTAAATGTAAGAGACCTTATATATAAAAGTTGAAAAGAGGTTAGGAAAATTATATTTTTTTTAAGAGGTTAGT
TTTGAAAATAAAAAGAAAGGTTAAAAATCAAAATTCCCAAATATAAAATTATGATTTCCAAATTGTTCAAACAAAGTTCAATGGAAGAAGAGAAGAGTAGAAGGCGATTT
TGAAGCCCTAATAAATACGCCGATTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAGC
CACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAG
TCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAG
ATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAGCCTCGACTATTGAGATTGAATTTAGG
GCACATATAATTCCTTATCCTTCATGTCGATTAATTATACCAATTTTGACACATTATTTTTAATCTCTCTCTCTCTCTCTCTCGGATTAAAAATTGTAATAATATAAATT
GTTTTCATAATTAATTAAAGAAATAGAGAAGAGACCAATTTCCCCCTTGAAATTCAGGCCATTTTATCCTTGACTGATTCGTTGGACTACATACAGATTATACTTGGCTG
AAAGAAAAAAGGATTTACATGACACCCAAAATGTTGAGTACAAATTGATATTTTTTTATACAAATTATGGTGTTAGAATTAGTTGTTCTAGACATTGAGGGTTTGTTTTT
TAGATGATACGATAATATTTGAAGAAAAGTGATTGAATGAAAAATATAATTTTTTTTTAATGTTTGGTAGGGTGTGATTGGTATCTGGGGAACGGTTATACCTTATGATA
AAAGGTGTTTGGGGAAGGGTAAACCTATGTCATGATAAAAAAGGTGTTTGGGGATGGGTTATTGTATAACTGTTGTTATGATAGAAAGTGTTCGGGGAATGAATATGTGA
GTAGGATTATGACAAAGTTATCATAAGATGTGTTTGGAGGAAAGCCTTACACGATCAAATGTGTTTGGTTTTATACTTTATAATTGTTTCGACCTCGAATCATGTCTATT
TTTTATTTTTT

Protein sequence

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MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQR
SGVAVDGAEKLGTGSI

CsGy6G003580 (gene) of Cucumber (Gy14) v2.1 genome