; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy6G006470 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G006470
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L38
Genome locationGy14Chr6:5605662..5610403
RNA-Seq ExpressionCsGy6G006470
SyntenyCsGy6G006470
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]6.94e-9496.03Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK

Query:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    ++L
Subjt:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.65e-7484.14Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPV   T    ++  SL      PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]5.52e-6865.96Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRG-------------------------
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPV +  +    L G                         
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRG-------------------------

Query:  ------------------SLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                          S      +PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  ------------------SLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]7.04e-7070.49Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-----------------QQLR---------
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPV +  + +                  QLR         
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-----------------QQLR---------

Query:  -----GSLCSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
             G L S+T M       PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  -----GSLCSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]3.50e-7484.83Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPV +L+     L    C     PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein1.53e-7177.48Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
        MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPP   LT+               PKQIHEIKDFLLTARRK
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK

Query:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        DARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPGL+VQ++
Subjt:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A103XQP8 Ribosomal protein L38e (Fragment)1.69e-7484.83Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPV +L+     L    C     PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

A0A498I9U8 Uncharacterized protein4.88e-4662.33Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLH--NQQLRGSLCSATKM---------------
        +PKQIHEIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KADKLKQSLPP    T H  + QL     +   +               
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLH--NQQLRGSLCSATKM---------------

Query:  --------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
                PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  --------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein3.22e-5262.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---VRVLTLHNQQLRGSLCSATK----------------
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLPP       T +    +  L   ++                
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---VRVLTLHNQQLRGSLCSATK----------------

Query:  ------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
               PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  ------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L385.11e-5154.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-------------------QQLRGSLCSATK
        PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLPP ++L ++                     +++  L +A +
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-------------------QQLRGSLCSATK

Query:  M-----------------PKQIHEIKDFLLTARRKDARSVKIKRS-------------------------------KDVVKFKVRCSKYLYTLCVFDSEK
                          PKQIHEIKDFLLTARRKDARSVKIK+S                               +DVVKFKVRCSKYLYTL V D EK
Subjt:  M-----------------PKQIHEIKDFLLTARRKDARSVKIKRS-------------------------------KDVVKFKVRCSKYLYTLCVFDSEK

Query:  ADKLKQSLPPG
        ADKLKQSLPPG
Subjt:  ADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L384.8e-3195.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L385.8e-2991.3Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L381.3e-2376.81Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L387.9e-2682.61Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L384.3e-2478.26Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family3.4e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family3.4e-3295.65Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGTTAGGGTTTTGACCCTCCATAATCAGCAACTAC
GCGGCAGTCTCTGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAG
TGTACAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGTTAGGGTTTTGACCCTCCATAATCAGCAACTAC
GCGGCAGTCTCTGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGGTTTGAG
TGTACAAGATCTGTGA
Protein sequenceShow/hide protein sequence
MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRS
KDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL