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CsGy6G007300 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G007300
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationGy14Chr6:6207538..6208101
RNA-Seq ExpressionCsGy6G007300
SyntenyCsGy6G007300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]2.05e-7390.44Show/hide
Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        TSADKFINKSFLRKVAHIQ DTKTL DPVH DPFTR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]3.67e-7490.44Show/hide
Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN   ++SS SSSS GGSG SEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        TSADKFINKSFLRKVAHIQ DTKTL DPVHPDPFTR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]1.66e-9299.31Show/hide
Query:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
        L NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
Subjt:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]3.87e-7990.28Show/hide
Query:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
        L NKMWKSMLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
Subjt:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        VEDPDTVITSADKFINKSFLRKVAHIQ DTKTL DPVH DPFTR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]5.58e-7179.59Show/hide
Query:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRES
        L NK+WK+MLV +RIQG RR +SSTT P+ANNIQ ASS SSSS+   GGS  SEYMKGEYAPIYIV+GMVAV VSI THTAKQQLLHSP+VN SKKKRES
Subjt:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRES

Query:  IPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        IPEV+DPDT+I SA+KFINKSFLRKVAHIQ DTKTL DPVHP+PFTR
Subjt:  IPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein8.03e-9399.31Show/hide
Query:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
        L NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
Subjt:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

A0A1S3CBE5 uncharacterized protein LOC1034988991.87e-7990.28Show/hide
Query:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
        L NKMWKSMLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE
Subjt:  LQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        VEDPDTVITSADKFINKSFLRKVAHIQ DTKTL DPVH DPFTR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like1.78e-7490.44Show/hide
Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN   ++SS SSSS GGSG SEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        TSADKFINKSFLRKVAHIQ DTKTL DPVHPDPFTR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X13.42e-5671.03Show/hide
Query:  QNKMWKSMLV--ETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIP
        + K+WKSMLV   +RI+G R F+SSTT         ASS SSS       SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIP
Subjt:  QNKMWKSMLV--ETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIP

Query:  EVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        EV+DPDTVITSADKF+NKSFLRKVAHIQ   KTL DP HPDPFTR
Subjt:  EVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

E5GB52 Uncharacterized protein9.93e-7490.44Show/hide
Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR
        TSADKFINKSFLRKVAHIQ DTKTL DPVH DPFTR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein1.1e-1941.04Show/hide
Query:  VETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITS
        V  +  G+RRF ++T    A    N  S              + GE+AP+ I+ G V + V +A H+ KQQL+H+P ++  K +R ++ EV+DP+  ++S
Subjt:  VETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITS

Query:  ADKFINKSFLRKVAHIQSDTKT-LSDPVHPDPFT
        ADKFINKS+LRKV  IQ  +K  LSDP  P+PFT
Subjt:  ADKFINKSFLRKVAHIQSDTKT-LSDPVHPDPFT

AT5G07330.1 unknown protein2.5e-1633.85Show/hide
Query:  IQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKF
        +Q  R ++ +TT P +     A++        +  +   KG++ P+Y+ +G++++ V+   +TA   L  +P V  +KK RE++PE+EDPD V+  AD+F
Subjt:  IQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKF

Query:  INKSFLRKVAHIQSDTK--TLSDPVHPDPF
         N+S+ RK+AH+Q   K   +SDP+  D F
Subjt:  INKSFLRKVAHIQSDTK--TLSDPVHPDPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGAATAAGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTCATCCACTACAACCCCATCTGCCAATAATATTCAGAATGC
TTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCAGTGGTCGTGTCTA
TCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACT
TCAGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACGCTATCCGATCCAGTTCATCCCGACCCATTTACCCGGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCTTTTCTCGATATTTATTAATTCTTTAATTAATACATGTTACAGAATAAGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTC
ATCCACTACAACCCCATCTGCCAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAA
TCTACATTGTGATGGGGATGGTGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAG
AGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCAGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACGCT
ATCCGATCCAGTTCATCCCGACCCATTTACCCGGTGAACG
Protein sequenceShow/hide protein sequence
MLQNKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVIT
SADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTR