CuGenDBv2

Gene ID	CsGy6G007310
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	40S ribosomal protein S27
Genome location	Gy14Chr6:6209355..6211648
RNA-Seq Expression	CsGy6G007310
Synteny	CsGy6G007310
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0042788 - polysomal ribosome (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000592 - Ribosomal protein S27 IPR011332 - Zinc-binding ribosomal protein IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

NP_191670.1 ribosomal protein S27 [Arabidopsis thaliana]

1.14e-57

97.67

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_002512685.1 40S ribosomal protein S27-2 [Ricinus communis]

8.05e-58

98.84

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_006295333.1 40S ribosomal protein S27-2 [Capsella rubella]

8.05e-58

98.84

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]

2.80e-58

100

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_031384267.1 40S ribosomal protein S27-2 [Punica granatum]

1.14e-57

97.67

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CCJ2 40S ribosomal protein S27

1.36e-58

100

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S27

1.36e-58

100

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S27

3.90e-58

98.84

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

B9RG16 40S ribosomal protein S27

3.90e-58

98.84

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

E5GB53 40S ribosomal protein S27

1.36e-58

100

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hits

e value

%identity

Alignment

O64650 40S ribosomal protein S27-1

4.5e-42

94.05

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S27

5.7e-37

83.72

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-3

2.9e-41

92.86

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S27

1.0e-41

93.02

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-2

4.3e-45

97.67

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G45710.1 Zinc-binding ribosomal protein family protein

3.2e-43

94.05

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S27

3.1e-46

97.67

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein

2.0e-37

82.56

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein

2.1e-42

92.86

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGT
GAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTA
AGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

mRNA sequence

Show/hide mRNA sequence

CCTATTTCAAGAATGATGAAGTGATTAGATCTTTGTACAATCTATCTAAGCATCAATCTACAAATTGATACATTACTATTTTTTCTTTAAAAAAGATTTCTTCATAATTA
GAAGAAAGGCATGAAGATCAGTGTGATTCAAACTCTACAAATTTTAACTATGAACAAATGAAATGGACGAAGACAATGTTAATTAGGATTGTTCGAGTATTTTTCAAAAA
GAAGAAAAAATACCTTTAAATCTTATTTTCTTGAAATCGTTTTTAGAAGAGAACATTTTAACTAATAACTGAATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTGT
ACGTAGCCCTAGGCGCTTCAAAAACCAAAGGCTGAGATTTATTTATAAAGAGATCAAACGGTCCACAATTCACAGCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTC
TCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGG
TTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAA
TGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCT
AACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCAT
ATTTTGTCTTTGTCCTCGGGTTTTCTTTATCTACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGAAAGAGCATTTTGGCACCCCTGTTCCAGTACAATGCAAC
TAAGTTAAGTTTTGTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCAATAGTTGTAAAATTAAATCGCATTTTCTGCTTCTTTTAGTGTTTGA
AATGAAATATTGAATTGTTCTTGGTGTGCGATAGCTCAAGCAATGTTATCTCTTTACGATTAAATATGTTTGTTGATTGAATTATCTGCTCTTTATACTACATTAGACTT
TCCTGTTTCTGCCTCAATGTCATATGATGCAGTGTAGTGATTTTTTAATTGGTCCTCTTGATCCTTCTCATCATGATGTAGTGTAGTAGTTGTCTATTTGATTTGAGATT
TGCATTTTTCCACACAATTTATTTTGGCTGTGTGGTCTTATCCTTCTGTTTCTTAGGCGCTTGTTTTCCTTAATGTGAGGTTCTCTTTGGATATGGCGAATGATTGTAGA
AAAATTGGTCCATTTGTTTTGTGGTTGATACTTGATATGGGGCTTGCAAATCGTTTTATTCTTGATGTTATTGATGAAGCCAAGAAATTATTTGTGATGTCATACTAGAA
TGTCTTGAAGTAACGAGTTTTGCTACATTTTGGTTCTTGTGATGAGTTGATTTGGAGTGTAAAGATTGAATCCGTGAACTACTGTAAGACAGAACCACTTTTTTGCACGA
AAGCTGCTGCATTGTTTAGTTTGACCCAACGTGATTGCTCATGGTTTTAATTTTTTTTATAATTTAGTATGATAATATATGGTGTGTGAGCATTCATGGATTGAAGTTGA
GAAATTTTTTTTAAAAAATTGACTTAAACTGATTACGGCCAATCAATGATCATACATAATGATAGCTTTGGTTTGCAAAAAAGCTATAATATGACTCTTATGAGAATTTT
GTGAACTATATGGATTATTAAAAAGTTTTATTAAATAATGTACACTAAAATTTAACTAGACCGAGTTATTTAGTTTACTTAGGGGTTCTTTGTTGGACCGAAAATGTAAT
GTAGTTGAACGTTATTATTTTCTATTTTCATTACTCAAAGA

Protein sequence

Show/hide protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

CsGy6G007310 (gene) of Cucumber (Gy14) v2.1 genome