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CsGy6G011265 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G011265
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationGy14Chr6:9682191..9682568
RNA-Seq ExpressionCsGy6G011265
SyntenyCsGy6G011265
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.13e-1039.64Show/hide
Query:  RKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISV
        RKI IEERNG +  K+EL+ GTSA VRDCL  AA  +NP VFW RR L+                            TR+ I  G  G GR+  A E S+
Subjt:  RKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISV

Query:  L-LLGLEGAIR
            G EG+++
Subjt:  L-LLGLEGAIR

KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]5.03e-1377.55Show/hide
Query:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG
        KVRKIYIEERNGRKFGKMELDFGTSA VRDCLT+AAV   P +F    G
Subjt:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.27e-1377.55Show/hide
Query:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG
        KVRKIYIEERNGRKFGKMELDFGTSA VRDCLT+AAV   P +F    G
Subjt:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]1.53e-4074.53Show/hide
Query:  MRKVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAE
        M K RKIYIEERNGR FGK+ELDFGTSA VRDCL  AA ANN  VFW RR L+FAIIFFQVLEN +GRF ILSLESFK +KTRIFI +GS+G G +S A 
Subjt:  MRKVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAE

Query:  EISVLL
        EIS LL
Subjt:  EISVLL

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein3.76e-68100Show/hide
Query:  MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFAS
        MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFAS
Subjt:  MELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISVLLLGLEGAIRISFAS

Query:  EVWKGN
        EVWKGN
Subjt:  EVWKGN

A0A0A0LY03 Uncharacterized protein8.19e-2559.18Show/hide
Query:  RKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEI
        RKIYIEERNGRK GK++LD GT   V D L  AA A+     W R+ L F IIFFQVLEN   RF I+SL+SFKG+K R+FIS+GS+  G +S A EI
Subjt:  RKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEI

A0A5A7UMB2 Retrotransposon protein, putative, unclassified2.44e-1377.55Show/hide
Query:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG
        KVRKIYIEERNGRKFGKMELDFGTSA VRDCLT+AAV   P +F    G
Subjt:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG

A0A5D3C9P5 Ty3/gypsy retrotransposon protein2.55e-1377.55Show/hide
Query:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG
        KVRKIYIEERNGRKFGKMELDFGTSA VRDCLT+AAV   P +F    G
Subjt:  KVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRG

A0A5D3CQQ0 Uncharacterized protein7.42e-4174.53Show/hide
Query:  MRKVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAE
        M K RKIYIEERNGR FGK+ELDFGTSA VRDCL  AA ANN  VFW RR L+FAIIFFQVLEN +GRF ILSLESFK +KTRIFI +GS+G G +S A 
Subjt:  MRKVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAE

Query:  EISVLL
        EIS LL
Subjt:  EISVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGGTTAGGAAAATTTATATTGAAGAAAGAAATGGTAGGAAATTTGGTAAAATGGAGCTGGACTTTGGGACCTCAGCTTTGGTTAGGGATTGTCTAACAAATGC
TGCAGTTGCAAATAATCCCAGGGTTTTTTGGGGTAGAAGAGGGCTGAAGTTCGCCATTATCTTCTTCCAGGTTTTGGAGAATGCAAGAGGTAGGTTTGTCATTCTATCCC
TAGAATCTTTTAAAGGAAAAAAGACGAGAATTTTCATATCGAAAGGGAGCAAAGGAAAGGGTAGGAAATCTTTTGCAGAGGAGATATCGGTTTTACTTTTGGGTCTGGAA
GGGGCGATTAGAATCAGTTTTGCTTCCGAGGTTTGGAAGGGAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGGTTAGGAAAATTTATATTGAAGAAAGAAATGGTAGGAAATTTGGTAAAATGGAGCTGGACTTTGGGACCTCAGCTTTGGTTAGGGATTGTCTAACAAATGC
TGCAGTTGCAAATAATCCCAGGGTTTTTTGGGGTAGAAGAGGGCTGAAGTTCGCCATTATCTTCTTCCAGGTTTTGGAGAATGCAAGAGGTAGGTTTGTCATTCTATCCC
TAGAATCTTTTAAAGGAAAAAAGACGAGAATTTTCATATCGAAAGGGAGCAAAGGAAAGGGTAGGAAATCTTTTGCAGAGGAGATATCGGTTTTACTTTTGGGTCTGGAA
GGGGCGATTAGAATCAGTTTTGCTTCCGAGGTTTGGAAGGGAAATTAG
Protein sequenceShow/hide protein sequence
MRKVRKIYIEERNGRKFGKMELDFGTSALVRDCLTNAAVANNPRVFWGRRGLKFAIIFFQVLENARGRFVILSLESFKGKKTRIFISKGSKGKGRKSFAEEISVLLLGLE
GAIRISFASEVWKGN