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CsGy6G011940 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G011940
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRep_fac-A_C domain-containing protein
Genome locationGy14Chr6:10397485..10400572
RNA-Seq ExpressionCsGy6G011940
SyntenyCsGy6G011940
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]1.60e-112100Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
XP_008465398.1 PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]2.55e-10796.25Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]6.40e-9890.45Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]5.77e-9890.45Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
XP_031742644.1 uncharacterized protein LOC101220454 [Cucumis sativus]1.67e-10995.21Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFA--------AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        PFA        AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  PFA--------AETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
TrEMBL top hitse value%identityAlignment
A0A0A0KEN7 Uncharacterized protein7.59e-110100Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
A0A1S3CNQ4 uncharacterized protein LOC1035030281.23e-10796.25Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNPSS LCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSS-LCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X13.10e-9890.45Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X22.80e-9890.45Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X37.29e-9789.81Show/hide
Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN K ITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG+
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.0e-4252.87Show/hide
Query:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T++CYRVCS C+R LP +      SS CKFC        S   K ++R+LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF

Query:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN
        AA  V+++ +GEMLR+T+++P+N NAQH RV  +VPL S  QPAI+ LR++   N++
Subjt:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATGGGAAGCCAATAACAACCATGTGCGCAGTGATGGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGTTAACCC
ATCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCCTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAA
CTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATT
CTGGAGGGAGAGATGCTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCAAT
TATTAGACTGAGGGAATTGTATGGAGTAAATTCCAATTGA
mRNA sequenceShow/hide mRNA sequence
CGACCATTTCCCCAAACAGTGTGAAGAACAGTGTTGTATTTTTAGTTTTCAGGAACAAAGCAGTTTCCTTTAGAGGAGTAATGGAAAATGGGAAGCCAATAACAACCATG
TGCGCAGTGATGGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGTTAACCCATCTTCTCTTTGCAAATTCTGCAACTTCAA
CGCCTTTAATCCCGGTTCTTCCTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGG
TTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGAGGGAGAGATGCTTAGAATCACAATA
TCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGAGTAAA
TTCCAATTGATACCTATGGTTTCATTTGCTGTTGGTAATGGACAAAACAAGCAGTGGTTCCATAAAGTGAAGAGATGTGATGTGGGCACCTCAAAATAACCTAATCCCAT
CCCATCCCAAGAATGGACAATATTTTGTTATTTGATGTGATTTTGTGTGCAGTGGAGAAGACTATTGTAACTTGAAAGGAAGAAAGAAGGTAGGCAACAGTTACCTATAT
GTGGTGTACTGTAATGAAATTTTATCGATGGATTTACGATAATGAGTCTAAGTCACAAAAGTAGTTGAAGTTGTGATCAGGTTAACCTAAATATTTTGCAAACTGAATAG
Protein sequenceShow/hide protein sequence
MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEI
LEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYGVNSN