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CsGy6G013170 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G013170
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionLipid-A-disaccharide synthase
Genome locationGy14Chr6:11564683..11565437
RNA-Seq ExpressionCsGy6G013170
SyntenyCsGy6G013170
Gene Ontology termsGO:0009245 - lipid A biosynthetic process (biological process)
GO:2001289 - lipid X metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005543 - phospholipid binding (molecular function)
GO:0008915 - lipid-A-disaccharide synthase activity (molecular function)
InterPro domainsIPR003835 - Glycosyl transferase, family 19


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143231.2 probable lipid-A-disaccharide synthase, mitochondrial [Cucumis sativus]3.19e-72100Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

XP_008456392.1 PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Cucumis melo]2.61e-6493.1Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M WMN KCCLQ QRVMQSLLNNT+RY S YRVAANAFEM+AKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGL SLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

XP_008456394.1 PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial isoform X3 [Cucumis melo]2.38e-6493.1Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M WMN KCCLQ QRVMQSLLNNT+RY S YRVAANAFEM+AKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGL SLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

XP_038900509.1 probable lipid-A-disaccharide synthase, mitochondrial isoform X1 [Benincasa hispida]1.02e-5481.03Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M W+  KCCL+ + VMQ LLNNT+RY S Y+VAANAFEMAAKHGELRVFIVAGEVSGDTI SRLM+SLRTLSPVPV+FSG+GGPMMSKQGL SLF MEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELF HL+ IR
Subjt:  AVMGIWELFSHLKSIR

XP_038900510.1 probable lipid-A-disaccharide synthase, mitochondrial isoform X2 [Benincasa hispida]1.02e-5481.03Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M W+  KCCL+ + VMQ LLNNT+RY S Y+VAANAFEMAAKHGELRVFIVAGEVSGDTI SRLM+SLRTLSPVPV+FSG+GGPMMSKQGL SLF MEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELF HL+ IR
Subjt:  AVMGIWELFSHLKSIR

TrEMBL top hitse value%identityAlignment
A0A0A0KBH7 Lipid-A-disaccharide synthase1.55e-72100Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

A0A1S3C378 Lipid-A-disaccharide synthase1.15e-6493.1Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M WMN KCCLQ QRVMQSLLNNT+RY S YRVAANAFEM+AKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGL SLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

A0A1S3C4E2 Lipid-A-disaccharide synthase1.27e-6493.1Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M WMN KCCLQ QRVMQSLLNNT+RY S YRVAANAFEM+AKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGL SLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

A0A5D3CRH5 Lipid-A-disaccharide synthase1.27e-6493.1Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        M WMN KCCLQ QRVMQSLLNNT+RY S YRVAANAFEM+AKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGL SLFLMEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELFSHLKSIR
Subjt:  AVMGIWELFSHLKSIR

A0A6J1FY39 Lipid-A-disaccharide synthase1.43e-5178.45Show/hide
Query:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI
        MLWM  KCC + +R+M+  L+N  RY S YRVAANAFEM+A HGELRVFIVAGEVSGDTIASRLM SLRTLSPVPV FSGVGG MMSKQGL SLF MEDI
Subjt:  MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDI

Query:  AVMGIWELFSHLKSIR
        AVMGIWELF HL  IR
Subjt:  AVMGIWELFSHLKSIR

SwissProt top hitse value%identityAlignment
A6V1E5 Lipid-A-disaccharide synthase3.6e-1048.61Show/hide
Query:  GELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI
        G LRV +VAGE SGD + S LM +LR   P  + F GVGGP M  +GL+S F ME ++VMG+ E+   L  +
Subjt:  GELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI

B6IST7 Lipid-A-disaccharide synthase3.0e-1251.43Show/hide
Query:  LRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI
        L +F++AGE SGD +  RLMA+LR      V F+GVGGP M++QGL SLF MED+A+ G+ EL   L ++
Subjt:  LRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI

C1DST3 Lipid-A-disaccharide synthase2.8e-1047.22Show/hide
Query:  GELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI
        G LRV +VAGE SGD + + LM +L+ + P  + F GVGGP M  +GL S F ME +AVMG++E+   L  +
Subjt:  GELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSI

F4IF99 Probable lipid-A-disaccharide synthase, mitochondrial5.2e-2561.05Show/hide
Query:  TRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSIRV
        T+RY S ++ A +  + AA  GELRVFIV+GEVSGD I SRLM+SL+ LSP+P+ F+GVGG +M K+GL SLF MED+AVMG+WEL  HL   RV
Subjt:  TRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSIRV

Q5LSU1 Lipid-A-disaccharide synthase2.1e-1050.7Show/hide
Query:  LRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWEL---FSHLK
        +RVFI+AGE SGD +   LMA LR L P  V F GVGGP M  +GL+S F M ++++MG+ E+   + HLK
Subjt:  LRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWEL---FSHLK

Arabidopsis top hitse value%identityAlignment
AT2G04560.1 transferases, transferring glycosyl groups3.7e-2661.05Show/hide
Query:  TRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSIRV
        T+RY S ++ A +  + AA  GELRVFIV+GEVSGD I SRLM+SL+ LSP+P+ F+GVGG +M K+GL SLF MED+AVMG+WEL  HL   RV
Subjt:  TRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFSHLKSIRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGGATGAACTGCAAATGCTGCTTACAACCGCAGCGAGTCATGCAGAGTTTGCTCAACAATACGAGAAGGTACTTCTCATATTATAGGGTAGCTGCTAATGCCTT
CGAGATGGCTGCAAAACACGGCGAATTGAGGGTTTTCATTGTCGCCGGAGAAGTTTCCGGCGATACCATCGCTTCTCGTCTCATGGCATCTCTGAGGACGCTTTCTCCTG
TTCCTGTTAATTTCTCCGGCGTCGGAGGCCCCATGATGTCCAAGCAAGGGCTTACGTCTCTATTCCTCATGGAGGATATTGCAGTAATGGGAATATGGGAGTTATTTTCT
CATCTAAAGAGTATTAGAGTGAGTAATTCAAAGCATAATGACTGGTGTTTTACTGTTTCTCTCTCTCTTTTTTTCCCCTTATTTTTTATACAGGAGAAGAAAAGAATTTT
CTGCATAGTCATACGGTACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTATGGATGAACTGCAAATGCTGCTTACAACCGCAGCGAGTCATGCAGAGTTTGCTCAACAATACGAGAAGGTACTTCTCATATTATAGGGTAGCTGCTAATGCCTT
CGAGATGGCTGCAAAACACGGCGAATTGAGGGTTTTCATTGTCGCCGGAGAAGTTTCCGGCGATACCATCGCTTCTCGTCTCATGGCATCTCTGAGGACGCTTTCTCCTG
TTCCTGTTAATTTCTCCGGCGTCGGAGGCCCCATGATGTCCAAGCAAGGGCTTACGTCTCTATTCCTCATGGAGGATATTGCAGTAATGGGAATATGGGAGTTATTTTCT
CATCTAAAGAGTATTAGAGTGAGTAATTCAAAGCATAATGACTGGTGTTTTACTGTTTCTCTCTCTCTTTTTTTCCCCTTATTTTTTATACAGGAGAAGAAAAGAATTTT
CTGCATAGTCATACGGTACAACTAG
Protein sequenceShow/hide protein sequence
MLWMNCKCCLQPQRVMQSLLNNTRRYFSYYRVAANAFEMAAKHGELRVFIVAGEVSGDTIASRLMASLRTLSPVPVNFSGVGGPMMSKQGLTSLFLMEDIAVMGIWELFS
HLKSIRVSNSKHNDWCFTVSLSLFFPLFFIQEKKRIFCIVIRYN