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CsGy6G014045 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G014045
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTropomyosin
Genome locationGy14Chr6:12464099..12464410
RNA-Seq ExpressionCsGy6G014045
SyntenyCsGy6G014045
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]9.29e-4792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG 
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-

Query:  AGGD
        AGGD
Subjt:  AGGD

KAE8645885.1 hypothetical protein Csa_017706 [Cucumis sativus]4.96e-60100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA

Query:  GGD
        GGD
Subjt:  GGD

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]3.04e-3983.33Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G   AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G G
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG

Query:  GD
        GD
Subjt:  GD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]1.50e-4083.33Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G G
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG

Query:  GD
        GD
Subjt:  GD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]5.94e-4792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG 
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-

Query:  AGGD
        AGGD
Subjt:  AGGD

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein2.40e-60100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA

Query:  GGD
        GGD
Subjt:  GGD

A0A5A7V5U9 Tropomyosin4.50e-4792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG 
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A5D3CVK1 Tropomyosin2.88e-4792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG 
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A6J1D515 circumsporozoite protein-like2.57e-3372.64Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA---SATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG
        S+KICFCIPRHKNGHKA+GGSEKSSKSKPSRRKS R  K GKHSSSSDSSG+GN     AA   S  AVAAV V   TA TMDA++DDGGS H HGG GG
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA---SATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG

Query:  SGAGGD
         G GGD
Subjt:  SGAGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATC
TCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGG
TCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATC
TCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGG
TCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG
Protein sequenceShow/hide protein sequence
MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD