; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy6G014570 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G014570
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTHO complex subunit 4A-like
Genome locationGy14Chr6:12786033..12789479
RNA-Seq ExpressionCsGy6G014570
SyntenyCsGy6G014570
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061942.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa]1.49e-12698.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

XP_004143092.1 THO complex subunit 4A [Cucumis sativus]4.39e-129100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

XP_008448384.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo]5.96e-12798.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

XP_008448388.1 PREDICTED: THO complex subunit 4A-like isoform X2 [Cucumis melo]6.76e-12798.39Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR

XP_038901991.1 THO complex subunit 4A-like [Benincasa hispida]8.10e-12597.33Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADP SGF  QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN NGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

TrEMBL top hitse value%identityAlignment
A0A0A0KBU2 RRM domain-containing protein2.12e-129100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

A0A1S3BIZ4 THO complex subunit 4A-like isoform X23.27e-12798.39Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPR

A0A1S3BK70 THO complex subunit 4A-like isoform X12.89e-12798.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

A0A5A7V158 THO complex subunit 4A-like isoform X17.21e-12798.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

A0A6J1G721 THO complex subunit 4A-like2.28e-11591.44Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NGAPRR
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

SwissProt top hitse value%identityAlignment
O08583 THO complex subunit 49.3e-3546.11Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A        NR  PYS PK     WQHD+F    SGF  
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV

Query:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST
          G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T
Subjt:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST

Q3T0I4 THO complex subunit 47.1e-3545.1Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A         NR  PYS PK     WQHD+F    SGF 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL

Query:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT
           G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T    P 
Subjt:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT

Query:  AAVN
         +VN
Subjt:  AAVN

Q6NQ72 THO complex subunit 4D2.2e-3648.35Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK
        M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S        +     WQ  +F D      ++   AS ++ GT+
Subjt:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK

Query:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPA
        L+++NLD GV+NEDI+ELFSE+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+ A
Subjt:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPA

Q8L719 THO complex subunit 4B2.2e-5261.98Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV

Q8L773 THO complex subunit 4A6.0e-5865.62Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-5361.98Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.3e-5965.62Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein3.1e-5765.1Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

AT5G59950.4 RNA-binding (RRM/RBD/RNP motifs) family protein4.3e-5965.62Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRR

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-5965.79Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCG
TAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGC
AAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAT
ATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAA
CGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGG
CTCCGAGAAGGTATAAACTCTATTATGTTTTTATGCCTAATCATTGA
mRNA sequenceShow/hide mRNA sequence
CGCCAAATCTCTCTCACCAAACCATTACACCGTCGAGGAATCTCCGAAACCCTAAATTCCCATTTTCTTGTCAGTCTTCTTTTTTCGATTACTCCTTCAACTTTGTTTTC
TTTCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGT
TCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCC
GAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAAC
TTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCG
GCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCC
TTTCGAAAATTCAAATGGGGCTCCGAGAAGGTATAAACTCTATTATGTTTTTATGCCTAATCATTGAAATTAGAACACAGATTTGTTTATAATTGGATGGAATAGTTAAC
TACATCCGCATATTGTAACATAATATATCATGAATTGCAAGTATTACTGTTAAAGTTTTCAGATTGATATTAGCTGTTTTCAGATTCTTAAGTCTTATTTTAACTGTTAA
AGTTTTCTTCCCCTTGTTTTGGTGACCTTTAATTCTGCTTATAAAGGATTTGTATTACGGCCTCTTCATTTGTTGTAGTAGTTAACTTGTGGTATATTTTAGGTGGAGTA
TGCTGTTGTATGTTTTCTCGGGAAAATTTGTCTCTGATGCAGACAATTATGGCATATGAATTCGTACTTGAATAACTTTTTTACAGATTTGTACAATGATACACGATAAA
GATGGTTGGAGCCATTTTTTTTCATTTGTAGTGTGTCCCCTTTACTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGATTTTACATTGTTTTATATAATCA
GTGGTACCGTCCTCTGAGCCATCCATATCATAGTGACATTCATTTTATAATGGAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGA
AGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCT
TATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCT
TTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCT
GTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGTTGGAATAAAACCCTGGCTGCTAATTATACATCA
AATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTA
TGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAATAGG
TGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGCGAATCCGCTGAGCAGTTTGCCGCAACTCAGAG
GCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCAACATGATCTCCTTCATTAGACCATGGATAGCAT
CATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATTCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCCTGTGGATTG
AGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTATTTTCACTGACATATAGTATCAATAGCGTAGATAGGTATGTTAATATCACCTTCTTC
ATATTTCCATACTCCCCTTCGATTTAAATTTGGACCAGTTTTGATGGTTTATTTGTAAAAGCTATAATGTGTATGTCAATATCAATTTTGACTGAATGTGGTTGTTTATA
TAGATAATGGGGGGGGGG
Protein sequenceShow/hide protein sequence
MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGD
MKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRYKLYYVFMPNH