; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy6G014965 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G014965
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationGy14Chr6:13212947..13215592
RNA-Seq ExpressionCsGy6G014965
SyntenyCsGy6G014965
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051137.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.91e-11581.41Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        +LKERDLALNALKENL LAQNRMKK+AD KRRELK KVG+EVYLKLRPYRQRSLARK+ EKLAP++YGPY IIEEIG + YRL LPPEA+IH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        K KLG QKVVQ Q PMLT +FELQLWPE VLGIRWNKELGANEWL+KW++LPE+EATWE+VYQMNQQFP+FHLEDKVN+EPRG+VRPPI+HTY R+ +K
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]3.68e-13597.13Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPY QRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLGKQ VVQQQQPMLTTDFELQLWPEQVLGIRWNK+LGANEWLVKWKNLPETEATWE VYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

Query:  NSPTCKERE
        NSPT  ERE
Subjt:  NSPTCKERE

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]1.32e-11288.44Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        MLKERDLAL ALKENL++AQNRMKK AD+KRRELKFKVGDEVYLKLRPYRQ SLARKR EKLAPKFYGPY IIEEIGEVAYRL+LPPEASIHDVFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        KLKLGK  VVQ QQP+LT +FELQL PE VLGIRWNK+LGANEWLVKWK LPE EATWEAVYQMNQQFPTFHLEDKVNLEPRG+VRPPIIHTY RKG+K
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

TYK05441.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.45e-11580.68Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        +LKERDLA++ALKENL +AQNRMKK+AD+KRRELKFKVGDEVYLKLRPYRQRSLARKR EKLAPK+YGPY I E IGEVAYRL LPPEASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLG Q  VQ QQP LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+FHLEDKV LEPRG+VRPPII+ Y RKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

Query:  NSPTCKE
             KE
Subjt:  NSPTCKE

TYK23222.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.79e-11281Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        MLKERDLA++ALKENL +AQNRMKK+ D+KRRELKFKVGDEVYLKLRPY QRSLA+KR EKLAPK+YGPY I E IGEVAYRL LPPEASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLGKQ  +Q QQP LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+FHLEDKV LEP+G+VRPPII+ Y RKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

TrEMBL top hitse value%identityAlignment
A0A5A7TJ89 Transposon Ty3-G Gag-Pol polyprotein1.01e-11080.4Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        +LKERDLA+NALKENLH+AQNRMKK AD KRRELKFKVGDEVYLKLRPYRQRS A+KR +KLAP++YGPY I E IGEVAYRL LP EASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        KLKLGKQ +V  QQP+LT +FELQLWPE VL IRW+ +L ANEWLVKWK LPE+EATWE+VY MNQQFPTFHLEDKV+LEPRG+VRPPII+ Y RKGKK
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

A0A5A7U9P7 Retrotransposable element Tf22.86e-11581.41Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        +LKERDLALNALKENL LAQNRMKK+AD KRRELK KVG+EVYLKLRPYRQRSLARK+ EKLAP++YGPY IIEEIG + YRL LPPEA+IH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        K KLG QKVVQ Q PMLT +FELQLWPE VLGIRWNKELGANEWL+KW++LPE+EATWE+VYQMNQQFP+FHLEDKVN+EPRG+VRPPI+HTY R+ +K
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

A0A5A7USP1 Transposon Ty3-G Gag-Pol polyprotein6.48e-11281.5Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        MLKERDLA++ALKENL +AQNRMKK+AD+KRRELKFKVGDEVYLKLRPYRQRSLA+KR EKLAPK+YGPY I E IGEVAYRL  PPEASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLGKQ  +Q QQP LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP +EATWE+VY MNQQFP+FHLEDKV LEP+G+VRPPII+ Y RKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

A0A5D3C0K0 Transposon Ty3-G Gag-Pol polyprotein1.19e-11580.68Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        +LKERDLA++ALKENL +AQNRMKK+AD+KRRELKFKVGDEVYLKLRPYRQRSLARKR EKLAPK+YGPY I E IGEVAYRL LPPEASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLG Q  VQ QQP LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+FHLEDKV LEPRG+VRPPII+ Y RKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

Query:  NSPTCKE
             KE
Subjt:  NSPTCKE

A0A5D3DI23 Transposon Ty3-G Gag-Pol polyprotein8.67e-11381Show/hide
Query:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL
        MLKERDLA++ALKENL +AQNRMKK+ D+KRRELKFKVGDEVYLKLRPY QRSLA+KR EKLAPK+YGPY I E IGEVAYRL LPPEASIH+VFHISQL
Subjt:  MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQL

Query:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG
        KLKLGKQ  +Q QQP LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+FHLEDKV LEP+G+VRPPII+ Y RKGKKG
Subjt:  KLKLGKQKVVQQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKG

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.1e-0433.33Show/hide
Query:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK
        +KE+L+    +MKK+ D K +E+ +F+ GD V +K    R ++    +  KLAP F GP+ ++++ G   Y L LP          FH+S L+
Subjt:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK

P0CT35 Transposon Tf2-2 polyprotein3.1e-0433.33Show/hide
Query:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK
        +KE+L+    +MKK+ D K +E+ +F+ GD V +K    R ++    +  KLAP F GP+ ++++ G   Y L LP          FH+S L+
Subjt:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK

P0CT36 Transposon Tf2-3 polyprotein3.1e-0433.33Show/hide
Query:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK
        +KE+L+    +MKK+ D K +E+ +F+ GD V +K    R ++    +  KLAP F GP+ ++++ G   Y L LP          FH+S L+
Subjt:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK

P0CT41 Transposon Tf2-12 polyprotein3.1e-0433.33Show/hide
Query:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK
        +KE+L+    +MKK+ D K +E+ +F+ GD V +K    R ++    +  KLAP F GP+ ++++ G   Y L LP          FH+S L+
Subjt:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK

Q9UR07 Transposon Tf2-11 polyprotein3.1e-0433.33Show/hide
Query:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK
        +KE+L+    +MKK+ D K +E+ +F+ GD V +K    R ++    +  KLAP F GP+ ++++ G   Y L LP          FH+S L+
Subjt:  LKENLHLAQNRMKKWADTKRREL-KFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEAS--IHDVFHISQLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAGGAGAGAGATCTGGCATTGAACGCCTTGAAGGAGAACCTTCACTTAGCCCAAAACCGCATGAAGAAATGGGCAGACACCAAAAGAAGGGAATTGAAGTTCAA
GGTGGGTGATGAAGTATACCTAAAGCTCAGACCTTATAGGCAGAGATCCTTAGCTCGGAAAAGGTGTGAAAAGCTGGCTCCAAAATTCTACGGGCCTTACACAATCATTG
AAGAGATAGGAGAGGTGGCCTATAGATTGAAACTTCCACCAGAGGCGAGTATTCATGATGTATTCCACATCTCACAGTTGAAGCTCAAGTTAGGTAAGCAGAAGGTTGTG
CAGCAACAGCAACCTATGTTGACAACAGATTTCGAATTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAA
GTGGAAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTG
TTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGA
mRNA sequenceShow/hide mRNA sequence
AAGATTGTATATGGAAGGCAACCACCCCCGATTCTATCCTACGGAACCCGAAAAACTCAGAATGATGAGGTAGAAATAATGCTCAAGGAGAGAGATCTGGCATTGAACGC
CTTGAAGGAGAACCTTCACTTAGCCCAAAACCGCATGAAGAAATGGGCAGACACCAAAAGAAGGGAATTGAAGTTCAAGGTGGGTGATGAAGTATACCTAAAGCTCAGAC
CTTATAGGCAGAGATCCTTAGCTCGGAAAAGGTGTGAAAAGCTGGCTCCAAAATTCTACGGGCCTTACACAATCATTGAAGAGATAGGAGAGGTGGCCTATAGATTGAAA
CTTCCACCAGAGGCGAGTATTCATGATGTATTCCACATCTCACAGTTGAAGCTCAAGTTAGGTAAGCAGAAGGTTGTGCAGCAACAGCAACCTATGTTGACAACAGATTT
CGAATTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGGAAGAATTTACCAGAAACTGAAGCCACAT
GGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTGTTGTGAGACCCCCAATCATACATACGTATGTT
AGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGA
Protein sequenceShow/hide protein sequence
MLKERDLALNALKENLHLAQNRMKKWADTKRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEEIGEVAYRLKLPPEASIHDVFHISQLKLKLGKQKVV
QQQQPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE