; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy6G015543 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G015543
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPol protein
Genome locationGy14Chr6:14387590..14387955
RNA-Seq ExpressionCsGy6G015543
SyntenyCsGy6G015543
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025374.1 pol protein [Cucumis melo var. makuwa]5.87e-7590.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYA+VR
Subjt:  QKIKARMQTAQSRQKSYADVR

KAA0050751.1 pol protein [Cucumis melo var. makuwa]1.65e-7591.74Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

KAA0063119.1 pol protein [Cucumis melo var. makuwa]1.65e-7591.74Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

TYK19872.1 pol protein [Cucumis melo var. makuwa]1.58e-7590.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

TYK24448.1 pol protein [Cucumis melo var. makuwa]2.87e-7590.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MG RLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

TrEMBL top hitse value%identityAlignment
A0A5A7SIA7 Pol protein2.84e-7590.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYA+VR
Subjt:  QKIKARMQTAQSRQKSYADVR

A0A5A7UB07 Pol protein7.97e-7691.74Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

A0A5A7VBY8 Pol protein7.97e-7691.74Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

A0A5D3D8I8 Pol protein7.66e-7690.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

A0A5D3DLK1 Pol protein1.39e-7590.91Show/hide
Query:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI
        MG RLDFSTAFHPQTDGQTERLNQVLEDMLRAC LEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYGKCCR+PVCW EVGEQRLMGPELV+S NEAI
Subjt:  MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAI

Query:  QKIKARMQTAQSRQKSYADVR
        QKI++RM TAQSRQKSYADVR
Subjt:  QKIKARMQTAQSRQKSYADVR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.4e-1130.51Show/hide
Query:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI
        + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      +P+      ++     E  +   +  Q +
Subjt:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI

Query:  KARMQTAQSRQKSYADVR
        K  + T   + K Y D++
Subjt:  KARMQTAQSRQKSYADVR

P0CT35 Transposon Tf2-2 polyprotein3.4e-1130.51Show/hide
Query:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI
        + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      +P+      ++     E  +   +  Q +
Subjt:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI

Query:  KARMQTAQSRQKSYADVR
        K  + T   + K Y D++
Subjt:  KARMQTAQSRQKSYADVR

P0CT36 Transposon Tf2-3 polyprotein3.4e-1130.51Show/hide
Query:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI
        + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      +P+      ++     E  +   +  Q +
Subjt:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI

Query:  KARMQTAQSRQKSYADVR
        K  + T   + K Y D++
Subjt:  KARMQTAQSRQKSYADVR

P0CT41 Transposon Tf2-12 polyprotein3.4e-1130.51Show/hide
Query:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI
        + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      +P+      ++     E  +   +  Q +
Subjt:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI

Query:  KARMQTAQSRQKSYADVR
        K  + T   + K Y D++
Subjt:  KARMQTAQSRQKSYADVR

Q9UR07 Transposon Tf2-11 polyprotein3.4e-1130.51Show/hide
Query:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI
        + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      +P+      ++     E  +   +  Q +
Subjt:  LDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYG-KCCRTPVCWSEVGEQRLMGPELVRSINEAIQKI

Query:  KARMQTAQSRQKSYADVR
        K  + T   + K Y D++
Subjt:  KARMQTAQSRQKSYADVR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACGAGATTAGATTTCAGTACAGCCTTTCATCCACAGACTGATGGTCAAACTGAACGTTTGAACCAAGTTTTAGAGGATATGCTACGAGCTTGTATTCTAGAGTT
TCCAGGTAGTTGGGACTCTCATCTACATTTGATGGAGTTTGCTTATAACAACAGTTTCCAGGCTACCATCGGTATGACACCATTTGAGGCTTTGTATGGTAAATGTTGTA
GAACCCCTGTTTGTTGGAGTGAGGTTGGTGAACAGAGGTTGATGGGACCTGAATTGGTTCGGTCTATTAATGAGGCTATTCAAAAGATTAAAGCACGTATGCAAACAGCG
CAGAGTAGACAGAAGAGTTATGCAGATGTACGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACGAGATTAGATTTCAGTACAGCCTTTCATCCACAGACTGATGGTCAAACTGAACGTTTGAACCAAGTTTTAGAGGATATGCTACGAGCTTGTATTCTAGAGTT
TCCAGGTAGTTGGGACTCTCATCTACATTTGATGGAGTTTGCTTATAACAACAGTTTCCAGGCTACCATCGGTATGACACCATTTGAGGCTTTGTATGGTAAATGTTGTA
GAACCCCTGTTTGTTGGAGTGAGGTTGGTGAACAGAGGTTGATGGGACCTGAATTGGTTCGGTCTATTAATGAGGCTATTCAAAAGATTAAAGCACGTATGCAAACAGCG
CAGAGTAGACAGAAGAGTTATGCAGATGTACGGTGA
Protein sequenceShow/hide protein sequence
MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACILEFPGSWDSHLHLMEFAYNNSFQATIGMTPFEALYGKCCRTPVCWSEVGEQRLMGPELVRSINEAIQKIKARMQTA
QSRQKSYADVR