CuGenDBv2

Gene ID	CsGy6G015545
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Reverse transcriptase
Genome location	Gy14Chr6:14388016..14388321
RNA-Seq Expression	CsGy6G015545
Synteny	CsGy6G015545
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032427.1 pol protein [Cucumis melo var. makuwa]

8.72e-59

90.1

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

1.74e-58

89.11

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

KAA0045454.1 pol protein [Cucumis melo var. makuwa]

4.01e-59

87.13

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVS+CLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+G  VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

KAA0053361.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.02e-59

90.1

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.35e-58

89.11

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SSN9 Pol protein

4.22e-59

90.1

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

A0A5A7TPA9 Pol protein

8.43e-59

89.11

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

A0A5A7TQR2 Pol protein

1.94e-59

87.13

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVS+CLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+G  VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

A0A5A7UIH1 Ty3-gypsy retrotransposon protein

2.92e-59

90.1

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLSV EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

A0A5A7UJG5 Ty3-gypsy retrotransposon protein

6.55e-59

89.11

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        MKREVAEFVSKCLVCQQVKAPRQKP GLLQPLS+ EWKWENVSMDFI+GLP+TL+GF VI VVVDRLTKSAHFVPGKSTYTASKWAQLY++E+VRLHGVP
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Query:  V
        V
Subjt:  V

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.1e-14

Show/hide

Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A+++   V+   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

P0CT41 Transposon Tf2-12 polyprotein

2.1e-14

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A+++   V+   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.6e-17

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        ++  + +++  C+ CQ +K+ R +  GLLQPL ++E +W ++SMDF++GLP T     +ILVVVDR +K AHF+  + T  A++   L    +   HG P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.6e-17

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        ++  + +++  C+ CQ +K+ R +  GLLQPL ++E +W ++SMDF++GLP T     +ILVVVDR +K AHF+  + T  A++   L    +   HG P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Q9UR07 Transposon Tf2-11 polyprotein

2.1e-14

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Query:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP
        +++++ E+V  C  CQ  K+   KP G LQP+  SE  WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A+++   V+   G P
Subjt:  MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAAGGGAAGTGGCGGAATTCGTTAGTAAGTGTCTAGTATGTCAGCAGGTTAAGGCACCTAGACAGAAACCAACAGGTTTGTTACAACCTTTAAGTGTGTCAGAGTG
GAAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCAGAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTG
TACCAGGGAAATCCACTTATACTGCTAGTAAGTGGGCACAGTTGTATTTAACTGAGGTTGTGAGACTGCATGGAGTGCCTGTATAG

mRNA sequence

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Protein sequence

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MKREVAEFVSKCLVCQQVKAPRQKPTGLLQPLSVSEWKWENVSMDFISGLPKTLKGFRVILVVVDRLTKSAHFVPGKSTYTASKWAQLYLTEVVRLHGVPV

CsGy6G015545 (gene) of Cucumber (Gy14) v2.1 genome