CuGenDBv2

Gene ID	CsGy6G015880
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Genome location	Gy14Chr6:14909399..14912529
RNA-Seq Expression	CsGy6G015880
Synteny	CsGy6G015880
Gene Ontology terms	GO:0001172 - transcription, RNA-templated (biological process) GO:0030422 - production of siRNA involved in RNA interference (biological process) GO:0070919 - production of siRNA involved in chromatin silencing by small RNA (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016020 - membrane (cellular component) GO:0031380 - nuclear RNA-directed RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007523 - NDUFAF3/Mth938 domain-containing protein IPR036748 - MTH938-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637205.1 hypothetical protein CSA_004607 [Cucumis sativus]

3.09e-82

93.85

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAAR KAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSI
        YEG+LLCVGNLLMSWTPKKFSEITSD  ++
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSI

KAE8646648.1 hypothetical protein Csa_005003 [Cucumis sativus]

5.83e-92

97.83

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

KAE8647057.1 hypothetical protein Csa_023061 [Cucumis sativus]

5.83e-92

97.83

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

KGN51474.2 hypothetical protein Csa_008783 [Cucumis sativus]

1.84e-64

95.24

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Query:  RRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKFS
        RRKPGFSQPL SLR AFSLYDQINLIDNVP+DQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVDYEG+LLCVGNLLMSWTPKKFS
Subjt:  RRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKFS

Query:  EITSD
        EITSD
Subjt:  EITSD

TYK24537.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 3-like [Cucumis melo var. makuwa]

7.02e-71

75.68

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY                             +ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKM
        YEG+LLCVGNLLMSW+PKKFSEIT DSLSIFQIVRPIPGKICCCVRKM
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB84 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.96e-61

73.91

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY                             +ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSW+PKKFSEIT DSLSIFQIVRPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

A0A5A7TES8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.96e-61

73.91

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY                             +ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSW+PKKFSEIT DSLSIFQIVRPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

A0A5D3DLM8 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3-like

3.40e-71

75.68

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY                             +ETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKM
        YEG+LLCVGNLLMSW+PKKFSEIT DSLSIFQIVRPIPGKICCCVRKM
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKM

A0A6J1HIQ3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

3.14e-57

68.84

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLPNLIR+++ DRR+PG SQPLPSLR AFSLYDQINLIDNVPEDQLRFQRY                             +ETGFTVNG+D
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSW+PKKFSEIT +SLSIFQI+RPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

A0A6J1KD25 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

1.48e-55

67.39

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MAARQKAVATLPNLIR+++ DRR+PG SQPLPSLR AFSLYDQINLIDNVPEDQLRFQ Y                             +ETGFTVNG+D
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVG+LLMSW+PKKFSEIT +SLSIFQI+RPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G44525.1 Protein of unknown function (DUF498/DUF598)

4.2e-35

57.55

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGV
        MA R K++ATLP LI++++  +  P  S P LPSLR AFSLYDQINLIDNVPEDQLRFQ                              +++T FTVNGV
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGV

Query:  DYEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
         YEG+LLCVGNLLMSW+P+KFSEIT+DSLSIFQ VRPIP
Subjt:  DYEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

AT3G60150.1 Protein of unknown function (DUF498/DUF598)

5.0e-36

58.7

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD
        MA RQKA+ATLP LI++++N+  K   S  LPSLR AFSLYDQINLIDNVPEDQLRFQ                              + ET FTVNGV 
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVD

Query:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP
        YEG+LLCVGNLLMSW+P+ FS+IT+DSLSIFQ VRPIP
Subjt:  YEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIP

Sequences

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CDS sequence

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ATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGATGTGC
CTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTT
TCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATAGTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAACTTGCTTTGTGTTGGGAAT
TTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCCGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTCCAGGTAAAATCTGTTGTTGTGTTCGGAA
AATGTGTTGA

mRNA sequence

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CATGTCGTCTCTTCGCAAAGCTACTGCTCGATTTCTTTCGCAAAACACTAAATGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAA
GGGATTTGGGGGCGAAACTCCGGGACGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGA
TCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGATGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTC
AACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATAGTGAGACGGGGTTC
ACTGTGAATGGAGTGGATTATGAGGGCAACTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCCGATAGCTTATCTATCTT
CCAGATTGTGCGCCCTATTCCAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGAATTATTGGGCATTGTTGAAGTAGTTTTAATACGAGTGTCTAAAGATACCTAG
ATTTGACGTTTCTATTGAAATGTGTTTATTACTAAAGGACGTCTGTGATTTTCCTTGACAATTGGTGCCCAAATGTTATATGGTAAGTTGTATTGTCCTGTCAGATTATT
GAGGTGAAGTGCAAGCTGGCCCGCGACTGTGGACGAGTAAGGTTCTTGGACTAGTTTTTCTGTGCTTGAGCATGAGCAAGACTTTAACTTTATCATTCCTTTCCTTCTTT
CAATACTGTAACATGTGGGGTAAGATTTTCACGTCTGCCTTAGACGAGGATATCTTATGAGATAGTGCAGGTTGTGGCCTAATTGTTCCTTTGAAGTATCCCACAATACA
ACCATGCCTTAGTTTTGCTGTTTAAATAATTAGATTTTTGATAATTTGACTCGTGTACCTAGTTAAAAATGTAGACGGATCTGAAGCTTTTAAACAGGAAGATGATGAGG
ATTTTTTTTTCTTCACTCTTTCTCGTTTTTTTCTTCCTTCTCTCTCTTTCGGCTGATAAGCAAGTCTACCCTCCATATACCTTTCTTTGGCACTTCGGACCGGTCTTAAT
ACTCCATCCAGCTAGGTGATAGCTTCTAACCTCTGCCGATATTCACACCTTCCCGATCCCGATACTCTCTCTATTTTGATTATGCTAGAAGAGGGAAGAGGACCAAATGA
GATATTTACATCAGCTAGCTAATGTTGTAAGGGACGTGTAATATGTTATAGAGGAGATGGGAGAATGAATCTAGAATTTGTAAATTTGTTATTGAGAAAGGGAGGAATAA
CATAATTAGAGTGGACTCGTAATATTTATCAATTAAAAGCTTCTTGAATATGTGAAAGATTTGCACTTTTCAGCCATTGAATGAATTACCAAGACCTAAACTCTTGTTTC
TTTATTCTTTCTCTGATTCTGAGATGAGGATGTCAAGTGTACGTTTCTGTTAACAAGGTTTATGGTTTTCTTTCTTAGGCATTCTTCTAGAATCTGACATGAGAGATTAC
TTCCATTTAAAGTTCAATGCATAAGCTAGCCTGTAAACCAAATATTCTGTTTATTTTCGAGCTCTGCCGTCATCATCTTAGTGCCGTGTATTGTTCATATTTGCTCTTTG
CTAGCACATTTTTGTTGATTTCTACTGTCAACTGATTAATTTTCTTAATTTTAATTTTTTTAAAATCTTTCTTATTGTCAGAAATTCTAATACTTGGCTATGGGAGATAA
ACTGAACTAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGGCATGAAGTTGGAAGCTGTAGACACGAGAAATGCGGCATCAACTTATAATATCCTAAATGAGGA
GGGTAGAATTGTAGCTGCAGCGCTTCTGCCTTATGGAGTTTCTTCATGACCCACCGCCCAGAGCCAGACTCGGTTGTTGTTATGGATGCCTCTAAAT

Protein sequence

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MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGN
LLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKMC

CsGy6G015880 (gene) of Cucumber (Gy14) v2.1 genome