CuGenDBv2

Gene ID	CsGy6G017005
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	condensin-2 complex subunit D3
Genome location	Gy14Chr6:17544103..17544399
RNA-Seq Expression	CsGy6G017005
Synteny	CsGy6G017005
Gene Ontology terms	GO:0007076 - mitotic chromosome condensation (biological process) GO:0009556 - microsporogenesis (biological process) GO:0010032 - meiotic chromosome condensation (biological process) GO:0098653 - centromere clustering (biological process) GO:0000779 - condensed chromosome, centromeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR026971 - Condensin subunit 1/Condensin-2 complex subunit D3

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637391.1 hypothetical protein CSA_018334, partial [Cucumis sativus]

1.12e-54

100

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

XP_008458433.1 PREDICTED: condensin-2 complex subunit D3 [Cucumis melo]

9.01e-52

96.97

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKASA S+SLSRAITAAYTIGSLILICPSA+MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

XP_023547430.1 condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo]

2.88e-48

87.88

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHTIITSGNRD KSNKLPIQT S+KETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

XP_038874590.1 condensin-2 complex subunit D3 isoform X1 [Benincasa hispida]

2.74e-50

92.93

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKA+ARSKSLSRA TA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQTASLKETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

XP_038874592.1 condensin-2 complex subunit D3 isoform X2 [Benincasa hispida]

2.63e-50

92.93

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKA+ARSKSLSRA TA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQTASLKETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C933 condensin-2 complex subunit D3

4.36e-52

96.97

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKASA S+SLSRAITAAYTIGSLILICPSA+MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

A0A5N6RG10 Cnd1 domain-containing protein

4.58e-38

73.47

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Query:  GKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        GK+A+A S+ LS A+TA YTIGSL+++CP+ADM  I PLLHTIITSGN D K NKLP  T SLK+TAPSLYIQAWLTMGKICL D K AK YIPLFVQ
Subjt:  GKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

A0A6J1CAM9 condensin-2 complex subunit D3

2.59e-48

88.89

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        MGKKA+A+SK LS+AITA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQT SLKE APSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

A0A6J1H4Z7 condensin-2 complex subunit D3

4.24e-47

85.86

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHTIITSGNRD KSNKLPIQT S+KETAPSLY+QAWLTMGKICL DEK AKSYIPLF+Q
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

A0A6J1L4I0 condensin-2 complex subunit D3

4.24e-47

84.85

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Query:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHT+ITSGNRD KSNKLPIQT S++ETAPSLY+QAWLTMGKICL DEK AKSYIPLFVQ
Subjt:  MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G15890.1 binding

1.2e-25

60.2

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Query:  KKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLK-SNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
        K+    SK LS+A+TA YTIGS ++I PSAD T IVP LHT+ITSGN D K  NKLP     LK+ AP LY Q+WLTM K+CL D K AK Y+PLF Q
Subjt:  KKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLK-SNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

Sequences

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CDS sequence

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ATGGGGAAGAAAGCATCTGCTAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCAT
AGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACTGCATCTCTGAAGGAAACTGCTCCTTCTTTATACATTC
AAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAG

mRNA sequence

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Protein sequence

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MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ

CsGy6G017005 (gene) of Cucumber (Gy14) v2.1 genome