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CsGy6G017090 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G017090
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptioncondensin-2 complex subunit D3
Genome locationGy14Chr6:17620643..17621645
RNA-Seq ExpressionCsGy6G017090
SyntenyCsGy6G017090
Gene Ontology termsGO:0007076 - mitotic chromosome condensation (biological process)
InterPro domainsIPR026971 - Condensin subunit 1/Condensin-2 complex subunit D3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637202.1 hypothetical protein CSA_019090, partial [Cucumis sativus]2.79e-5062.43Show/hide
Query:  AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------------IKT
        AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI                           IKT
Subjt:  AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------------IKT

Query:  GEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
         E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGEENN
Subjt:  GEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

KAE8637385.1 hypothetical protein CSA_004478 [Cucumis sativus]1.09e-4660.44Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------
        MS +S   +AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI                     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------

Query:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
              IKT E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGE+NN
Subjt:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

KAE8637391.1 hypothetical protein CSA_018334, partial [Cucumis sativus]1.96e-4760.99Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------
        MS +S   +AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI                     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------

Query:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
              IKT E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGEENN
Subjt:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

XP_008458433.1 PREDICTED: condensin-2 complex subunit D3 [Cucumis melo]8.16e-4357.69Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------
        MS +S   +AFR+FPD  VMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA SS+LP+GVLDLLKEISHAEVI                     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------

Query:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
              IKT E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGEENN
Subjt:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

XP_031745439.1 LOW QUALITY PROTEIN: condensin-2 complex subunit D3-like [Cucumis sativus]5.44e-4760.99Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------
        MS +S   +AFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI                     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------

Query:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
              IKT E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGEENN
Subjt:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

TrEMBL top hitse value%identityAlignment
A0A1S3C933 condensin-2 complex subunit D33.95e-4357.69Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------
        MS +S   +AFR+FPD  VMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA SS+LP+GVLDLLKEISHAEVI                     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVI---------------------

Query:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN
              IKT E+   L RS  L        PG+     +    LGK +   F      LLDDHGRTVQSSVTQVGLFGEENN
Subjt:  ------IKTGEANLCLQRSGQL-----LRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN

A0A6J1CAM9 condensin-2 complex subunit D31.35e-2158.88Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLP------------------KGVLDLLKEISHAEVI--I
        MS +S   +AFRRFPD SV+VEWL S+PRLIADNESSIQEECE+ FQELVLDRL+   SSSLP                  + VLDLLKEISH+EV+  +
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLP------------------KGVLDLLKEISHAEVI--I

Query:  KTGEANL
        K   ANL
Subjt:  KTGEANL

A0A6J1H4Z7 condensin-2 complex subunit D36.15e-3046.39Show/hide
Query:  KAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPK-----------------GVLDLLKEISHAEVI--IKTGEANLCL
        +AFRRFPD SV VEWLHSIPRLIADNESSIQEECE+ FQELVLDRL+R  SSSLP+                 GVLDLLKEISHAEV+  +K   ANL  
Subjt:  KAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPK-----------------GVLDLLKEISHAEVI--IKTGEANLCL

Query:  QRSGQLLRVPGSCCQKCPLILG----------------------------------KPLIGNFFISTGTLLDDHGRT-VQSSVTQVGLFGEENN
           G+  R+  S       I+G                                  K +   F      +LDDHGRT   S V QVGLFG+ENN
Subjt:  QRSGQLLRVPGSCCQKCPLILG----------------------------------KPLIGNFFISTGTLLDDHGRT-VQSSVTQVGLFGEENN

A0A6J1L4I0 condensin-2 complex subunit D36.15e-3047.47Show/hide
Query:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPK-----------------GVLDLLKEISHAEV-----
        MS +S   +AFRRFPD SV VEWLHSIPRLIADNESSIQEECE+ FQELVLDRL+R  SSSLP+                 GVLDLLKEISHAEV     
Subjt:  MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPK-----------------GVLDLLKEISHAEV-----

Query:  ----------------------IIKTGEANLCLQRS---GQLLRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRT-VQSSVTQVGLFGEENN
                              IIKT E+ L L +S    +    PG+     +    L K +   F      +LDDHGR    S V QVGLFG+ENN
Subjt:  ----------------------IIKTGEANLCLQRS---GQLLRVPGS--CCQKCPLILGKPLIGNFFISTGTLLDDHGRT-VQSSVTQVGLFGEENN

V4RYB3 Cnd1 domain-containing protein3.69e-1754.95Show/hide
Query:  SGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA--------------ESSSLPKGVLDLLKEISHAEV
        + IS   +AFR F D S+ VEWLHSIPRLI DNESSIQEECE+ F ELVLDR++R+              +S  +P+GVL LLKEI + EV
Subjt:  SGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA--------------ESSSLPKGVLDLLKEISHAEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G15890.1 binding1.2e-1343.14Show/hide
Query:  SGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA------ESSSL-------------------PKGVLDLLKEISHA
        + +S   +AFR   D  V  EWLHS+PR+I DNE+SIQEECE+ F ELVL+R+ RA      +S+SL                   P+GVL LL+E+ ++
Subjt:  SGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARA------ESSSL-------------------PKGVLDLLKEISHA

Query:  EV
        EV
Subjt:  EV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCATTTCTGTAGACCCTAAGGCCTTTCGAAGATTCCCAGATGGAAGTGTCATGGTCGAGTGGCTACACTCAATTCCACGTTTGATTGCTGACAATGAA
TCTAGCATTCAAGAAGAGTGTGAACACTCGTTTCAAGAACTAGTGCTAGACCGGTTGGCTAGAGCTGAATCTTCAAGTTTACCTAAAGGAGTATTGGATCTTCTT
AAAGAGATAAGTCATGCAGAGGTAATTATAAAGACTGGCGAAGCCAATCTTTGCCTCCAGAGAAGTGGACAGCTCCTCCGGGTGCCTGGTTCCTGTTGTCAGAAG
TGTCCACTTATCTTGGGAAAGCCATTGATTGGGAATTTCTTCATCAGCACTGGAACGCTCCTTGATGATCATGGTAGGACTGTTCAAAGTTCAGTGACTCAAGTA
GGTTTATTTGGAGAGGAAAACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGCATTTCTGTAGACCCTAAGGCCTTTCGAAGATTCCCAGATGGAAGTGTCATGGTCGAGTGGCTACACTCAATTCCACGTTTGATTGCTGACAATGAA
TCTAGCATTCAAGAAGAGTGTGAACACTCGTTTCAAGAACTAGTGCTAGACCGGTTGGCTAGAGCTGAATCTTCAAGTTTACCTAAAGGAGTATTGGATCTTCTT
AAAGAGATAAGTCATGCAGAGGTAATTATAAAGACTGGCGAAGCCAATCTTTGCCTCCAGAGAAGTGGACAGCTCCTCCGGGTGCCTGGTTCCTGTTGTCAGAAG
TGTCCACTTATCTTGGGAAAGCCATTGATTGGGAATTTCTTCATCAGCACTGGAACGCTCCTTGATGATCATGGTAGGACTGTTCAAAGTTCAGTGACTCAAGTA
GGTTTATTTGGAGAGGAAAACAATTAA
Protein sequenceShow/hide protein sequence
MSGISVDPKAFRRFPDGSVMVEWLHSIPRLIADNESSIQEECEHSFQELVLDRLARAESSSLPKGVLDLLKEISHAEVIIKTGEANLCLQRSGQLLRVPGSCCQK
CPLILGKPLIGNFFISTGTLLDDHGRTVQSSVTQVGLFGEENN