CuGenDBv2

Gene ID	CsGy6G018725
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	kinetochore protein NDC80 homolog
Genome location	Gy14Chr6:19402752..19403641
RNA-Seq Expression	CsGy6G018725
Synteny	CsGy6G018725
Gene Ontology terms	GO:0051301 - cell division (biological process) GO:0051315 - attachment of mitotic spindle microtubules to kinetochore (biological process) GO:0031262 - Ndc80 complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647230.1 hypothetical protein Csa_018959 [Cucumis sativus]

6.16e-82

100

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE
        MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE

Query:  IKRITERYWHLIQDVSVVLLSACS
        IKRITERYWHLIQDVSVVLLSACS
Subjt:  IKRITERYWHLIQDVSVVLLSACS

KAG6576966.1 Kinetochore protein NDC80-like protein, partial [Cucurbita argyrosperma subsp. sororia]

3.71e-38

65.55

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Query:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT
        GN FKELE MA ECNQAMRRLK DNCHQY LNAK STP DVMG+DYKT IKP+L+SFA   K SS  +LE LISLRQQSSE++AKIESR +HI SLQSH 
Subjt:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT

Query:  DEIKRITERYWHLIQDVSV
        +E++       + I+D ++
Subjt:  DEIKRITERYWHLIQDVSV

XP_023553517.1 kinetochore protein NDC80 homolog [Cucurbita pepo subsp. pepo]

9.98e-39

66.39

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Query:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT
        GN FKELE MA ECNQAMRRLK DNCHQY LNAK STP DVMG+DYKT IKPAL+SFA   K SS  +LE LISLRQQSSE++AKIESR +HI SLQSH 
Subjt:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT

Query:  DEIKRITERYWHLIQDVSV
        +E++       + I+D ++
Subjt:  DEIKRITERYWHLIQDVSV

XP_031739032.1 kinetochore protein NDC80 homolog isoform X2 [Cucumis sativus]

3.22e-39

73.79

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH
        +GN FKELE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYKT +KPAL+SFA++   SS M+LE LISLRQQSSE++AKIES+ +HIASLQSH
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH

Query:  TDE
         +E
Subjt:  TDE

XP_038884546.1 kinetochore protein NDC80 homolog [Benincasa hispida]

1.65e-38

73.33

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH
        MGN FKELE MA+ECNQAMRRLK DNCHQY LNAK STPTDVMGIDYKT +KPAL+SF    K SS ++L+ LISLR+QSSE++AKIESR N IASLQSH
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH

Query:  TDEIK
          E++
Subjt:  TDEIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGU7 Uncharacterized protein

3.33e-80

100

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE
        MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDE

Query:  IKRITERYWHLIQDVSVVLLSACS
        IKRITERYWHLIQDVSVVLLSACS
Subjt:  IKRITERYWHLIQDVSVVLLSACS

A0A1S3AYB0 kinetochore protein NDC80 homolog

6.22e-37

71.84

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH
        +GN FKELE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYK+ +KPAL+SFA++   SS M+LE LISLRQQSSE++AKI+S+ N IASLQSH
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH

Query:  TDE
         +E
Subjt:  TDE

A0A5D3DHD6 Kinetochore protein NDC80-like protein

6.22e-37

71.84

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Query:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH
        +GN FKELE +AMECNQAMRRLK D+CHQY LNAK STP DVMGIDYK+ +KPAL+SFA++   SS M+LE LISLRQQSSE++AKI+S+ N IASLQSH
Subjt:  MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKN---SSTMELEGLISLRQQSSESSAKIESRCNHIASLQSH

Query:  TDE
         +E
Subjt:  TDE

A0A6J1E5Y9 kinetochore protein NDC80 homolog

3.46e-38

75.49

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Query:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT
        GN FKELE MA ECNQAMRRLK DNCHQY LNAK STP DVMG+DYKT IKP+L+SFA   K SS  +LE LISLRQQSSE+SAKIESR +HI SLQSH 
Subjt:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT

Query:  DE
        +E
Subjt:  DE

A0A6J1JAC2 kinetochore protein NDC80 homolog

2.49e-38

66.39

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Query:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT
        GN FKELE MA ECNQAMRRLK DNCHQY LNAK STP DVMG+DYKT IKPAL+SFA   K SS  +LE LISLRQQSSE++AKIESR +HI SLQSH 
Subjt:  GNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHT

Query:  DEIKRITERYWHLIQDVSV
        +E +       + I+D ++
Subjt:  DEIKRITERYWHLIQDVSV

SwissProt top hits

e value

%identity

Alignment

Q9M1G5 Kinetochore protein NDC80 homolog

5.1e-15

40.78

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Query:  NMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTD
        N F +++T+A++CNQA+RRLK D   Q+++N +  TP  VMG+DYK+++KPAL S     K SS  ++E L++L+   SE ++KIES+ + + S+Q   +
Subjt:  NMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTD

Query:  EIK
        +++
Subjt:  EIK

Arabidopsis top hits

e value

%identity

Alignment

AT3G54630.1 CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink).

3.7e-16

40.78

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Query:  NMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTD
        N F +++T+A++CNQA+RRLK D   Q+++N +  TP  VMG+DYK+++KPAL S     K SS  ++E L++L+   SE ++KIES+ + + S+Q   +
Subjt:  NMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFA---KNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTD

Query:  EIK
        +++
Subjt:  EIK

Sequences

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CDS sequence

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ATGGGGAATATGTTTAAGGAGCTTGAGACCATGGCAATGGAATGTAACCAGGCTATGAGGAGGTTAAAGTTTGATAATTGTCATCAGTATTCACTGAATGCAAAG
GAGTCGACCCCAACTGATGTAATGGGGATTGACTATAAGACAATCATTAAGCCTGCACTCAATTCCTTTGCAAAGAATAGTTCCACGATGGAGTTGGAGGGTTTG
ATTTCTCTCAGGCAGCAATCAAGTGAAAGTAGTGCTAAAATTGAGTCGAGATGCAATCACATAGCTTCCCTTCAATCCCATACAGATGAAATAAAGCGCATAACA
GAAAGATATTGGCACTTGATTCAAGATGTGTCAGTTGTCTTACTTTCTGCATGTTCTTAA

mRNA sequence

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Protein sequence

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MGNMFKELETMAMECNQAMRRLKFDNCHQYSLNAKESTPTDVMGIDYKTIIKPALNSFAKNSSTMELEGLISLRQQSSESSAKIESRCNHIASLQSHTDEIKRIT
ERYWHLIQDVSVVLLSACS

CsGy6G018725 (gene) of Cucumber (Gy14) v2.1 genome