CuGenDBv2

Gene ID	CsGy6G018833
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	Gy14Chr6:19482862..19483403
RNA-Seq Expression	CsGy6G018833
Synteny	CsGy6G018833
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0015990 - electron transport coupled proton transport (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0048039 - ubiquinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR003918 - NADH:ubiquinone oxidoreductase IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647233.1 hypothetical protein Csa_019033 [Cucumis sativus]

8.88e-92

96.95

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Query:  MASIYIMIYLYICHIEKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLT
        MASIYIMIYLYICHIEKISGCKRCES CPT+FLSV VYLWHETTR+MVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLT
Subjt:  MASIYIMIYLYICHIEKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLT

Query:  TYAFCYHFELDDPLIQLMEDYKWIPFLDTYT
        TYAFCYHFELDDPLIQLMEDYKWIPFLDTYT
Subjt:  TYAFCYHFELDDPLIQLMEDYKWIPFLDTYT

KAE9610900.1 putative oxidoreductase [Lupinus albus]

4.82e-60

76.23

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF
        E   GCKRCESACPTDFLSVRVYLWHETTRSMV       YL+F TNYFPWLT VVV PI  G L+F FPHRGNKV+RWYTICIC+++LLLTTYAFCYHF
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF

Query:  ELDDPLIQLMEDYKWIPFLDTY
        +LDDPLIQL E+YKWI F D Y
Subjt:  ELDDPLIQLMEDYKWIPFLDTY

KAF1876812.1 hypothetical protein Lal_00035374 [Lupinus albus]

1.51e-60

76.23

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF
        E   GCKRCESACPTDFLSVRVYLWHETTRSMV       YL+F TNYFPWLT VVV PI  G L+F FPHRGNKV+RWYTICIC+++LLLTTYAFCYHF
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF

Query:  ELDDPLIQLMEDYKWIPFLDTY
        +LDDPLIQL E+YKWI F D Y
Subjt:  ELDDPLIQLMEDYKWIPFLDTY

KAF5753285.1 putative photosystem I protein PsaC [Helianthus annuus]

1.51e-58

81.42

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI
        E   GCKRCESACPTDFLSVRVYLWHETTR   YLVFTTN FPWLT +VV PIFAG L+FF PH+GN+V+RWYTICIC+LELLLTTYAFCYHF+LDDPLI
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI

Query:  QLMEDYKWIPFLD
        QL+EDYKWI F D
Subjt:  QLMEDYKWIPFLD

RKF76541.1 NADH-quinone oxidoreductase chain 4, chloroplastic [Golovinomyces cichoracearum]

6.48e-61

81.42

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI
        E   GCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTN FPWLT +VV PIFAG  + F PH+GN+V+RWYTICIC+LEL+LTTYAFCYHF+LDDPLI
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI

Query:  QLMEDYKWIPFLD
        QL+EDYKWI F D
Subjt:  QLMEDYKWIPFLD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDL8 4Fe-4S ferredoxin-type domain-containing protein

1.60e-83

90.98

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Query:  MASIYIMIYLYICHIEKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRW--YTICICVLELL
        MASIYIMIYLYICHIEKISGCKRCES CPT+FLSV VYLWHETTR+MVYLVFT NYF WLTTVVVFPIFAGLLLFFFPHRGNKVMRW  Y + ICVLELL
Subjt:  MASIYIMIYLYICHIEKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRW--YTICICVLELL

Query:  LTTYAFCYHFELDDPLIQLMEDYKWIPFLDTYT
        LTTYAFCYHFELDD LIQLMEDYKWIPFLDTYT
Subjt:  LTTYAFCYHFELDDPLIQLMEDYKWIPFLDTYT

A0A420IPS8 NADH-quinone oxidoreductase chain 4, chloroplastic

3.14e-61

81.42

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI
        E   GCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTN FPWLT +VV PIFAG  + F PH+GN+V+RWYTICIC+LEL+LTTYAFCYHF+LDDPLI
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLI

Query:  QLMEDYKWIPFLD
        QL+EDYKWI F D
Subjt:  QLMEDYKWIPFLD

A0A6A4QAS0 9 kDa polypeptide

2.33e-60

76.23

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF
        E   GCKRCESACPTDFLSVRVYLWHETTRSMV       YL+F TNYFPWLT VVV PI  G L+F FPHRGNKV+RWYTICIC+++LLLTTYAFCYHF
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF

Query:  ELDDPLIQLMEDYKWIPFLDTY
        +LDDPLIQL E+YKWI F D Y
Subjt:  ELDDPLIQLMEDYKWIPFLDTY

A0A6A5N0E4 9 kDa polypeptide

3.38e-58

76.23

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF
        E   GCKRCESACPTDFLSVRVYLWHETTRSMV       YL+F TNYFPWLT VVV PI  G L+F FPHRGNKV+RWYTICIC+++LLLTTYAFCYHF
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF

Query:  ELDDPLIQLMEDYKWIPFLDTY
        +LDDPLIQL E+YKWI F D Y
Subjt:  ELDDPLIQLMEDYKWIPFLDTY

A0A6A5N1E2 9 kDa polypeptide

7.31e-61

76.23

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF
        E   GCKRCESACPTDFLSVRVYLWHETTRSMV       YL+F TNYFPWLT VVV PI  G L+F FPHRGNKV+RWYTICIC+++LLLTTYAFCYHF
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSMV-------YLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHF

Query:  ELDDPLIQLMEDYKWIPFLDTY
        +LDDPLIQL E+YKWI F D Y
Subjt:  ELDDPLIQLMEDYKWIPFLDTY

SwissProt top hits

e value

%identity

Alignment

B1A984 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.7e-32

81.58

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Query:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY
        NYFPWLT +VV PI AG L+FF PHRGNKV+RWYTICICVLELLLTTYAFCYHF+LDDPL+QL EDYKWI F D Y
Subjt:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY

Q2A7B8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-32

81.08

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Query:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD
        NYFPWLT +VVFPIFAG L+FF PH+GN+V+RWYTICIC+LELLLTTYAFCYHF+ DDPLIQL+EDYKWI F D
Subjt:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD

Q2VED0 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-32

81.08

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Query:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD
        NYFPWLT +VVFPIFAG L+FF PH+GN+V+RWYTICIC+LELLLTTYAFCYHF+ DDPLIQL+EDYKWI F D
Subjt:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.1e-39

98.68

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Query:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY
        NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD Y
Subjt:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY

Q8S8U7 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

4.4e-33

82.43

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Query:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD
        NYFPWLT +VVFPIFAG L+FF PH+GN+V+RWYTICIC+LELLLTTYAFCYHF+LDDPLIQL+EDYKWI F D
Subjt:  NYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLD

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

3.1e-34

78.31

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Query:  VYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY
        VYLVFTTN FPWLT +VVFPI AG L+ F PHRGNKV +WYTICIC+LELLLTTYAFCY+F++DDPLIQL EDYKWI F D Y
Subjt:  VYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFELDDPLIQLMEDYKWIPFLDTY

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

7.5e-12

90.62

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Query:  EKISGCKRCESACPTDFLSVRVYLWHETTRSM
        E   GCKRCESACPTDFLSVRVYLWHETTRSM
Subjt:  EKISGCKRCESACPTDFLSVRVYLWHETTRSM

Sequences

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CDS sequence

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ATGGCATCTATCTATATCATGATATACTTATATATATGTCATATAGAAAAAATTTCAGGCTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCGT
TTATTTATGGCATGAAACAACTCGAAGCATGGTGTATCTTGTTTTTACTACGAATTATTTTCCTTGGTTAACAACAGTTGTAGTTTTTCCAATATTTGCGGGTTTATTAC
TTTTCTTTTTCCCTCATAGAGGAAATAAAGTAATGAGATGGTATACTATATGTATCTGTGTACTCGAGCTGCTTCTAACAACCTATGCGTTTTGTTATCATTTCGAATTA
GACGATCCATTAATCCAATTGATGGAGGATTATAAATGGATCCCTTTTTTGGATACTTACACTTAG

mRNA sequence

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Protein sequence

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MASIYIMIYLYICHIEKISGCKRCESACPTDFLSVRVYLWHETTRSMVYLVFTTNYFPWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYHFEL
DDPLIQLMEDYKWIPFLDTYT

CsGy6G018833 (gene) of Cucumber (Gy14) v2.1 genome