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CsGy6G019823 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G019823
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCCHC-type domain-containing protein
Genome locationGy14Chr6:20419624..20420030
RNA-Seq ExpressionCsGy6G019823
SyntenyCsGy6G019823
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059920.1 hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa]3.18e-0678.12Show/hide
Query:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
        KLGH+ EDCSSS D AEE+DCNSRFGTG ED 
Subjt:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
KGN47724.1 hypothetical protein Csa_018306 [Cucumis sativus]1.80e-70100Show/hide
Query:  MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL
        MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL
Subjt:  MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL

Query:  L
        L
Subjt:  L
OMP01185.1 Zinc finger, CCHC-type [Corchorus olitorius]8.11e-0737.68Show/hide
Query:  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
        +V+ F TD  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G+      DW
Subjt:  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
TrEMBL top hitse value%identityAlignment
A0A0A0KFU3 CCHC-type domain-containing protein8.73e-71100Show/hide
Query:  MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL
        MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL
Subjt:  MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRL

Query:  L
        L
Subjt:  L
A0A1R3K269 Zinc finger, CCHC-type3.92e-0737.68Show/hide
Query:  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
        +V+ F TD  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G+      DW
Subjt:  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
A0A5D3DML9 Uncharacterized protein1.54e-0678.12Show/hide
Query:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
        KLGH+ EDCSSS D AEE+DCNSRFGTG ED 
Subjt:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAA
TGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGC
TATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAA
TGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGC
TATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA
Protein sequenceShow/hide protein sequence
MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL