; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy6G020075 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G020075
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionzf-RVT domain-containing protein
Genome locationGy14Chr6:20779006..20779743
RNA-Seq ExpressionCsGy6G020075
SyntenyCsGy6G020075
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]1.86e-2130Show/hide
Query:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMF
        G+ I F +D W     L   F  L+R+    N++V          A  L  R      ++ LL  + M+       LSS RF   ++DS +W++ SS +F
Subjt:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMF

Query:  TMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--W
        T+KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY +L   WCI+C AN +S  HLF+HCP     W+ + +  G  W
Subjt:  TMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--W

Query:  STALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH
            S + + +     +G+   G  K +W        W  W E N+R F 
Subjt:  STALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH

CAN73452.1 hypothetical protein VITISV_028992 [Vitis vinifera]1.18e-2233.71Show/hide
Query:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA
        LSS RF   +++S +W++ SS +F++KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY SL   WCI+C  N +S  
Subjt:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA

Query:  HLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH
        HLF+HCP     W+ + +  G    LS    D+   L++    +G S   K +W      F W  W E N R F 
Subjt:  HLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH

RVW81108.1 hypothetical protein CK203_044712 [Vitis vinifera]2.20e-2232.57Show/hide
Query:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA
        LSS RF   ++DS +W++ SS +FT+K     L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY SL   WCI+C  N +S  
Subjt:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA

Query:  HLFIHCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL
        HLF+HCP     W+ + +  G  W    S + + +     +G+   G  K +W        W  W E N+R F +
Subjt:  HLFIHCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL

RVW85366.1 hypothetical protein CK203_045564 [Vitis vinifera]1.98e-2132.32Show/hide
Query:  SDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFAR
        SDS +W++ SSS F++KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY +L   WCI+C  N +S  HLF+HCP   
Subjt:  SDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFAR

Query:  QFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH
          W  +    G  W    S + + + +   +G+   G  K +W        W  W E N R F 
Subjt:  QFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH

RVX19652.1 hypothetical protein CK203_005129 [Vitis vinifera]1.87e-2229.44Show/hide
Query:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTM
        G+   F +D W     L   F  L+R+    N++V       L L          T   I L+ + M+    +LF  SS     SDS +W++ SS +F++
Subjt:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTM

Query:  KSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--WST
        KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY +LS  WCI+C  N +S  HLF+HCP     W  +    G  W  
Subjt:  KSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--WST

Query:  ALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH
          S + + + +   +G+   G  K +W        W  W E N R F 
Subjt:  ALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH

TrEMBL top hitse value%identityAlignment
A0A0A0KIZ8 DNA-directed RNA polymerase subunit beta7.61e-58100Show/hide
Query:  MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDD
        MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDD
Subjt:  MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDD

Query:  LT
        LT
Subjt:  LT

A0A438H996 zf-RVT domain-containing protein1.07e-2232.57Show/hide
Query:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA
        LSS RF   ++DS +W++ SS +FT+K     L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY SL   WCI+C  N +S  
Subjt:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA

Query:  HLFIHCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL
        HLF+HCP     W+ + +  G  W    S + + +     +G+   G  K +W        W  W E N+R F +
Subjt:  HLFIHCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL

A0A438KEN2 zf-RVT domain-containing protein9.06e-2329.44Show/hide
Query:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTM
        G+   F +D W     L   F  L+R+    N++V       L L          T   I L+ + M+    +LF  SS     SDS +W++ SS +F++
Subjt:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTM

Query:  KSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--WST
        KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY +LS  WCI+C  N +S  HLF+HCP     W  +    G  W  
Subjt:  KSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--WST

Query:  ALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH
          S + + + +   +G+   G  K +W        W  W E N R F 
Subjt:  ALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH

A5AIV6 zf-RVT domain-containing protein5.73e-2333.71Show/hide
Query:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA
        LSS RF   +++S +W++ SS +F++KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY SL   WCI+C  N +S  
Subjt:  LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHA

Query:  HLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH
        HLF+HCP     W+ + +  G    LS    D+   L++    +G S   K +W      F W  W E N R F 
Subjt:  HLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH

A5BQI4 Reverse transcriptase domain-containing protein8.99e-2230Show/hide
Query:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMF
        G+ I F +D W     L   F  L+R+    N++V          A  L  R      ++ LL  + M+       LSS RF   ++DS +W++ SS +F
Subjt:  GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMF

Query:  TMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--W
        T+KS    L+ V  P        +W    P K+K   W ++H  +NT D LQ   PY +L   WCI+C AN +S  HLF+HCP     W+ + +  G  W
Subjt:  TMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--W

Query:  STALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH
            S + + +     +G+   G  K +W        W  W E N+R F 
Subjt:  STALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACAATATTTCTTTTTGTAAAGATCCGTGGCATGATTGTGGTATTCTCTTTTGTGATTTTCCTCGTTTGTTTCGTCTCTTTTGTACTCTTAATATTTCTGTTGT
TGAAGCACGGCTTCTGATTTTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTAATCATGAAATTCATGAATGGGTATCTTTGTATGCTATTTTTGTCTTCTAGCA
GATTTCGTATGGTGTCTGATTCTTGGAGTTGGACTATTGACTCCTCATCTATGTTTACTATGAAATCTATGATTGATGACTTGACAGGTGTTCTTGAGCCTTTTGAAAGG
GATTTTTATTCAATCATTTGGATGGATCACTTCCCGAAGAAAATCAAAATTTTTCTTTGGGAGCTTAGTCATGAAGCTATAAACACTACTGATCATCTTCAACATTGTAT
GCCTTATATGTCTCTTTCCCTTTCTTGGTGTATTATGTGTTGTGCTAATGCTAAATCCCATGCTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCACA
TTTTGGAGGCTTTTGGTTGGTCTACTGCTTTGTCCAATGACATTTTAGACATCTTCAACTCTCTTATGGTGGGCCACCCGTTTATTGGTTGCAGTAAGGTTATTTGGTTC
ACCGTTCTTTGGGATTTCTTTTGGACTTTTTGGGGCGAGCTTAATAGACGTCCTTTTCATCTTTTAGTTCTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACAATATTTCTTTTTGTAAAGATCCGTGGCATGATTGTGGTATTCTCTTTTGTGATTTTCCTCGTTTGTTTCGTCTCTTTTGTACTCTTAATATTTCTGTTGT
TGAAGCACGGCTTCTGATTTTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTAATCATGAAATTCATGAATGGGTATCTTTGTATGCTATTTTTGTCTTCTAGCA
GATTTCGTATGGTGTCTGATTCTTGGAGTTGGACTATTGACTCCTCATCTATGTTTACTATGAAATCTATGATTGATGACTTGACAGGTGTTCTTGAGCCTTTTGAAAGG
GATTTTTATTCAATCATTTGGATGGATCACTTCCCGAAGAAAATCAAAATTTTTCTTTGGGAGCTTAGTCATGAAGCTATAAACACTACTGATCATCTTCAACATTGTAT
GCCTTATATGTCTCTTTCCCTTTCTTGGTGTATTATGTGTTGTGCTAATGCTAAATCCCATGCTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCACA
TTTTGGAGGCTTTTGGTTGGTCTACTGCTTTGTCCAATGACATTTTAGACATCTTCAACTCTCTTATGGTGGGCCACCCGTTTATTGGTTGCAGTAAGGTTATTTGGTTC
ACCGTTCTTTGGGATTTCTTTTGGACTTTTTGGGGCGAGCTTAATAGACGTCCTTTTCATCTTTTAGTTCTTTTTTGA
Protein sequenceShow/hide protein sequence
MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFER
DFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCSKVIWF
TVLWDFFWTFWGELNRRPFHLLVLF