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CsGy6G021823 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G021823
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotransposon protein
Genome locationGy14Chr6:22427542..22428412
RNA-Seq ExpressionCsGy6G021823
SyntenyCsGy6G021823
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047340.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.31e-2762.04Show/hide
Query:  LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPP
        +PT+ +S  LV+   F  ILMNT+NLN +      LAMA N K F+VG  FP D  YL MS F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P 
Subjt:  LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPP

Query:  WILSLHNL
         I+SL NL
Subjt:  WILSLHNL

KAA0050767.1 retrotransposon protein [Cucumis melo var. makuwa]3.10e-3460Show/hide
Query:  VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLN
        V LPTIL  K  VVPA F  ILMNT+NLNH+P SV  LAMA N K FVVG  FP D  YL MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+
Subjt:  VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLN

Query:  PPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
        P  ++SL NLHLL Q W +R S M  LN     L V L G
Subjt:  PPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG

KAA0062627.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.31e-3664.34Show/hide
Query:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL
        MV LPTIL  K LVV   F YILMNT+NLNH+P SV  LAM  N K FVVG LFP D  YL MS FG+  CSL C PSTPPSLVLN S  TH+LTFFLSL
Subjt:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL

Query:  NPPWILSLHNLHLLLQIWIHRLSPMMFLN
        +   I+SL NLHLLLQ    R S M+ LN
Subjt:  NPPWILSLHNLHLLLQIWIHRLSPMMFLN

TYJ98055.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.60e-2964.15Show/hide
Query:  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLS
        MNT+NLNH+P SV  LAMA N K FVVG LFP D  YL MS F + LCSL C PSTPPSLVLN S  TH+LTFFLSL+   I+SL NLHLLLQ      S
Subjt:  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLS

Query:  PMMFLN
         M+ LN
Subjt:  PMMFLN

XP_031745067.1 uncharacterized protein LOC116405245 [Cucumis sativus]1.25e-2798.33Show/hide
Query:  SLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
        SLVLNLSLQ HLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
Subjt:  SLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG

TrEMBL top hitse value%identityAlignment
A0A5A7TUN2 Putative mitochondrial protein2.73e-2663.89Show/hide
Query:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL
        MV L TI   K LVV   F  ILMNT+NLN +P S   LAMA N K FVVG  F  D  YL MS FG+TLCSLV PPSTPPSLVL+LS  THLL FFLSL
Subjt:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL

Query:  NPPWILSL
        +P  I+SL
Subjt:  NPPWILSL

A0A5A7TW10 Putative mitochondrial protein1.12e-2762.04Show/hide
Query:  LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPP
        +PT+ +S  LV+   F  ILMNT+NLN +      LAMA N K F+VG  FP D  YL MS F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P 
Subjt:  LPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPP

Query:  WILSLHNL
         I+SL NL
Subjt:  WILSLHNL

A0A5A7U8Q0 Retrotransposon protein1.50e-3460Show/hide
Query:  VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLN
        V LPTIL  K  VVPA F  ILMNT+NLNH+P SV  LAMA N K FVVG  FP D  YL MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+
Subjt:  VFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLN

Query:  PPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
        P  ++SL NLHLL Q W +R S M  LN     L V L G
Subjt:  PPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG

A0A5A7V6M4 Putative mitochondrial protein6.36e-3764.34Show/hide
Query:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL
        MV LPTIL  K LVV   F YILMNT+NLNH+P SV  LAM  N K FVVG LFP D  YL MS FG+  CSL C PSTPPSLVLN S  TH+LTFFLSL
Subjt:  MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSL

Query:  NPPWILSLHNLHLLLQIWIHRLSPMMFLN
        +   I+SL NLHLLLQ    R S M+ LN
Subjt:  NPPWILSLHNLHLLLQIWIHRLSPMMFLN

A0A5D3BHT2 Putative mitochondrial protein4.16e-2964.15Show/hide
Query:  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLS
        MNT+NLNH+P SV  LAMA N K FVVG LFP D  YL MS F + LCSL C PSTPPSLVLN S  TH+LTFFLSL+   I+SL NLHLLLQ      S
Subjt:  MNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLS

Query:  PMMFLN
         M+ LN
Subjt:  PMMFLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACATGCCCGTCTCT
GTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTA
TGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCTTTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATA
CTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTCCGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCA
GGGTAA
mRNA sequenceShow/hide mRNA sequence
ATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCG
TTCTGTTACATCCTCATGAACACAATAAACTTGAACCACATGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTC
TTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCT
TTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCT
CCGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAAGAGAACCTCCCCCTCATCTCACTGATTACCATTGTTTTTCTACCATTG
TTTCCCTTGTTGAACCCACCTCTTATCAAGAGGCCAGTATTAACCCAGTATGGCAGAAAGCAATGGATGAAGAATTACAGGCTCTTGAAAAGACGCACACTTGGG
ACTATGTTGATTTACCTCCCGGTAAAAGACCCATTGGTTGCAAATGGATTTACAAAATCAAAACTCACTCTGATGGAACTATTGAACGTTATAAAGCTCGGCTTG
TTGCAAAAGGATACTCACAAGAATATGGGATAGACTATGAAGAAACATTTGCCCCTGTTGCCCGGATGACATCTGTTCGCAGCTTGTTAGCTGTTGCTGCTGCCA
AACAGTGGCCTCTTTTTCAGATGGATGTCAA
Protein sequenceShow/hide protein sequence
MVFLPTILNSKFLVVPASFCYILMNTINLNHMPVSVASLAMAPNTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWI
LSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG